ArticlePloS one2012
Genomic position mapping discrepancies of commercial SNP chips.
Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- SMARTER-database: a tool to integrate SNP array datasets for sheep and goat breeds.GigaByte (Hong Kong, China) · 2024Article
- Establishing analytical validity of BeadChip array genotype data by comparison to whole-genome sequence and standard benchmark datasets.BMC medical genomics · 2022Article
- A Multidisciplinary Phenotyping and Genotyping Analysis of a Mapping Population Enables Quality to Be Combined with Yield in Rice.Frontiers in molecular biosciences · 2017Article
- Adrenal cortex expression quantitative trait loci in a German Holstein × Charolais cross.BMC genetics · 2016Article
- Revealing misassembled segments in the bovine reference genome by high resolution linkage disequilibrium scan.BMC genomics · 2016Article
- From big data analysis to personalized medicine for all: challenges and opportunities.BMC medical genomics · 2015Review
- A tool for mapping Single Nucleotide Polymorphisms using Graphics Processing Units.BMC bioinformatics · 2014Article
- Acceleration of X-chromosome gene order evolution in the cattle lineage.BMB reports · 2013Article
- Imputation of high-density genotypes in the Fleckvieh cattle population.Genetics, selection, evolution : GSE · 2013Article
- Evaluation of the lasso and the elastic net in genome-wide association studies.Frontiers in genetics · 2013Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The field of genetics has come to rely heavily on commercial genotyping arrays and accompanying annotations for insights into genotype-phenotype associations. However, in order to avoid errors and false leads, it is imperative that the annotation of SNP chromosomal positions is accurate and unambiguous. We report on genomic positional discrepancies of various SNP chips for human, cattle and mouse species, and discuss their causes and consequences.
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Registered trials
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