Evidence map›Paper›PMID 22363509›Full record

ArticlePloS one2012

Multiple sources of contamination in samples from patients reported to have XMRV infection.

Mary F Kearney, Jonathan Spindler, Ann Wiegand, Wei Shao, Elizabeth M Anderson, Frank Maldarelli, Francis W Ruscetti, John W Mellors, Steve H Hughes, Stuart F J Le Grice and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 50 citations in OpenAlex.

  1. Can Oncogenic Animal Viruses Pose a Threat to Humans?Pathogens (Basel, Switzerland) · 2025
    Review
  2. Diversity of RNA viruses in agricultural insects.Computational and structural biotechnology journal · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Mary F KearneyHIV Drug Resistance Program, National Cancer Institute, Frederick, Maryland, United States of America. kearneym@mail.nih.gov
Jonathan Spindler
Ann Wiegand
Wei Shao
Elizabeth M Anderson
Frank Maldarelli
Francis W Ruscetti
John W Mellors
Steve H Hughes
Stuart F J Le Grice
John M Coffin
National Cancer Institute · USFrederick National Laboratory for Cancer Research · USScience Applications International Corporation (United States) · USTufts University · USUniversity of Pittsburgh · US

Funding

Viral and Host Proteins as Therapeutic TargetsZIABC010494 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI LE GRICE, STUART F. J. · 2009 to 2021
$9.0M
Pathogenic Effects of Human Retroviruses on Hematopoietic and Adherent Cells.ZIABC010252 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI RUSCETTI, FRANCIS W · 2009 to 2013
$5.1M
Intramural NIH HHSPHS HHS 25XS119
6 · The paper itself

Abstract

Xenotropic murine leukemia virus (MLV)-related retrovirus (XMRV) was reported to be associated with prostate cancer by Urisman, et al. in 2006 and chronic fatigue syndrome (CFS) by Lombardi, et al. in 2009. To investigate this association, we independently evaluated plasma samples from 4 patients with CFS reported by Lombardi, et al. to have XMRV infection and from 5 healthy controls reported to be XMRV uninfected. We also analyzed viral sequences obtained from supernatants of cell cultures found to contain XMRV after coculture with 9 clinical samples from 8 patients. A qPCR assay capable of distinguishing XMRV from endogenous MLVs showed that the viral sequences detected in the CFS patient plasma behaved like endogenous MLVs and not XMRV. Single-genome sequences (N = 89) from CFS patient plasma were indistinguishable from endogenous MLVs found in the mouse genome that are distinct from XMRV. By contrast, XMRV sequences were detected by qPCR in 2 of the 5 plasma samples from healthy controls (sequencing of the qPCR product confirmed XMRV not MLV). Single-genome sequences (N = 234) from the 9 culture supernatants reportedly positive for XMRV were indistinguishable from XMRV sequences obtained from 22Rv1 and XMRV-contaminated 293T cell-lines. These results indicate that MLV DNA detected in the plasma samples from CFS patients evaluated in this study was from contaminating mouse genomic DNA and that XMRV detected in plasma samples from healthy controls and in cultures of patient samples was due to cross-contamination with XMRV (virus or nucleic acid).

Indexed as

DNA ContaminationAnimalsBase SequenceCell Line, TumorCoculture TechniquesDNA, ViralFatigue Syndrome, ChronicFemaleGene Products, envGenetic VariationHumansMaleMiceMolecular Sequence DataPhylogenyPolymerase Chain ReactionDNA, ViralGene Products, env

Identifiers

PMID22363509
PMCPMC3282701
OpenAlexW2101935162

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.