Evidence map›Paper›PMID 22363425›Full record

ArticlePloS one2012

Hospital and community ampicillin-resistant Enterococcus faecium are evolutionarily closely linked but have diversified through niche adaptation.

Marieke J A de Regt, Willem van Schaik, Miranda van Luit-Asbroek, Huberta A T Dekker, Engeline van Duijkeren, Catherina J M Koning, Marc J M Bonten, Rob J L Willems

Abstract read
In one paragraph

Article in PloS one, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. VirulenceFinder forMicrobiology spectrum · 2024
    Article
  3. Ampicillin-susceptibleMicrobiology spectrum · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Detection of vancomycin-resistantGenome research · 2019
    Article
  10. Antimicrobial Resistance inMicrobiology spectrum · 2018
    Review
  11. Article
  12. Characterization ofFrontiers in microbiology · 2017
    Article
  13. Article
  14. Co-diversification ofFrontiers in microbiology · 2016
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marieke J A de RegtDepartment of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands. mjaderegt@gmail.com
Willem van Schaik
Miranda van Luit-Asbroek
Huberta A T Dekker
Engeline van Duijkeren
Catherina J M Koning
Marc J M Bonten
Rob J L Willems

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundAmpicillin-resistant Enterococcus faecium (ARE) has emerged as a nosocomial pathogen. Here, we quantified ARE carriage in different community sources and determined genetic relatedness with hospital ARE. METHODS AND

resultsARE was recovered from rectal swabs of 24 of 79 (30%) dogs, 11 of 85 (13%) cats and 0 of 42 horses and from 3 of 40 (8%) faecal samples of non-hospitalized humans receiving amoxicillin. Multi-locus Sequence Typing revealed 21 sequence types (STs), including 5 STs frequently associated with hospital-acquired infections. Genes previously found to be enriched in hospital ARE, such as IS16, orf903, orf905, orf907, were highly prevalent in community ARE (≥79%), while genes with a proposed role in pathogenesis, such as esp, hyl and ecbA, were found rarely (≤5%) in community isolates. Comparative genome analysis of 2 representative dog isolates revealed that the dog strain of ST192 was evolutionarily closely linked to two previously sequenced hospital ARE, but had, based on gene content, more genes in common with the other, evolutionarily more distantly related, dog strain (ST266).

conclusionARE were detected in dogs, cats and sporadically in healthy humans, with evolutionary linkage to hospital ARE. Yet, their accessory genome has diversified, probably as a result of niche adaptation.

Indexed as

Biological EvolutionHospitalsResidence CharacteristicsAdaptation, PhysiologicalAmpicillinAnimalsAnti-Infective AgentsCatsDogsDrug Resistance, BacterialEnterococcus faeciumGenes, BacterialGenetic VariationHorsesHumansMicrobial Sensitivity TestsAmpicillinAnti-Infective Agents

Identifiers

PMID22363425
PMCPMC3281830

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.