Evidence map›Paper›PMID 22362775›Full record

ArticleThe Journal of biological chemistry2012

Ferritin protein nanocage ion channels: gating by N-terminal extensions.

Takehiko Tosha, Rabindra K Behera, Ho-Leung Ng, Onita Bhattasali, Tom Alber, Elizabeth C Theil

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 71 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Iron mobilization from intact ferritin: effect of differential redox activity of quinone derivatives with NADH/OJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Article
  5. Article
  6. A novel view of ferritin in cancer.Biochimica et biophysica acta. Reviews on cancer · 2023
    Review
  7. Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Flavin-mediated reductive iron mobilization from frog M and Mycobacterial ferritins: impact of their size, charge and reactivities with NADH/OJournal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2021
    Article
  14. Article
  15. Review
  16. Designability of Aromatic Interaction Networks atMolecules (Basel, Switzerland) · 2017
    Article
  17. From Dose to Response: In Vivo Nanoparticle Processing and Potential Toxicity.Advances in experimental medicine and biology · 2017
    Review
  18. Article
  19. Fe(2+) substrate transport through ferritin protein cage ion channels influences enzyme activity and biomineralization.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Takehiko ToshaChildren's Hospital Oakland Research Institute, Oakland, California 94609, USA.
Rabindra K Behera
Ho-Leung Ng
Onita Bhattasali
Tom Alber
Elizabeth C Theil
University of California, Berkeley · US

Funding

RED CELL FERRITIN: ONTOGENETIC CONTROLR01DK020251 · NIDDK · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI GOSS, DIXIE J, THEIL, ELIZABETH C · 1986 to 2010
$5.1M
X-RAY STRUCTURE AND STABILITY OF THE LEUCINE ZIPPERR01GM048958 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ALBER, THOMAS C · 1992 to 2008
$2.8M
Functions and Mechanisms of M. Tuberculosis S/T KinasesR01GM070962 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI ALBER, THOMAS C · 2005 to 2012
$2.2M
Ferritin: Protein/mRNA/DNA in Fe/O Regulation/MetabolismR56DK020251 · NIDDK · CHILDREN'S HOSPITAL & RES CTR AT OAKLAND · PI GOSS, DIXIE J, THEIL, ELIZABETH C · 2008 to 2008
$120k
RED CELL FERRITIN MRNA AND PROTEIN-STRUCTURE/FUNCTIONR37DK020251 · NIDDK · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI THEIL, ELIZABETH C · 1987 to 1994
–
NIDDK NIH HHS DK20251NIDDK NIH HHS R01 DK020251NIDDK NIH HHS R56 DK020251NIGMS NIH HHS GM48958NIGMS NIH HHS GM70962NIGMS NIH HHS R01 GM048958NIGMS NIH HHS R01 GM070962
6 · The paper itself

Abstract

Ferritin protein nanocages, self-assembled from four-α-helix bundle subunits, use Fe(2+) and oxygen to synthesize encapsulated, ferric oxide minerals. Ferritin minerals are iron concentrates stored for cell growth. Ferritins are also antioxidants, scavenging Fenton chemistry reactants. Channels for iron entry and exit consist of helical hairpin segments surrounding the 3-fold symmetry axes of the ferritin nanocages. We now report structural differences caused by amino acid substitutions in the Fe(2+) ion entry and exit channels and at the cytoplasmic pores, from high resolution (1.3-1.8 Å) protein crystal structures of the eukaryotic model ferritin, frog M. Mutations that eliminate conserved ionic or hydrophobic interactions between Arg-72 and Asp-122 and between Leu-110 and Leu-134 increase flexibility in the ion channels, cytoplasmic pores, and/or the N-terminal extensions of the helix bundles. Decreased ion binding in the channels and changes in ordered water are also observed. Protein structural changes coincide with increased Fe(2+) exit from dissolved, ferric minerals inside ferritin protein cages; Fe(2+) exit from ferritin cages depends on a complex, surface-limited process to reduce and dissolve the ferric mineral. High concentrations of bovine serum albumin or lysozyme (protein crowders) to mimic the cytoplasm restored Fe(2+) exit in the variants to wild type. The data suggest that fluctuations in pore structure control gating. The newly identified role of the ferritin subunit N-terminal extensions in gating Fe(2+) exit from the cytoplasmic pores strengthens the structural and functional analogies between ferritin ion channels in the water-soluble protein assembly and membrane protein ion channels gated by cytoplasmic N-terminal peptides.

Indexed as

Amino Acid SubstitutionAnimalsAntioxidantsAnuraCrystallography, X-RayCytoplasmEscherichia coliFerric CompoundsFerritinsIon Channel GatingIronNanostructuresProtein FoldingProtein Structure, SecondaryProtein Structure, TertiaryAntioxidantsFerric Compoundsferric oxideFerritinsIron

Identifiers

PMID22362775
PMCPMC3339931
OpenAlexW2057282235

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.