Evidence map›Paper›PMID 22362707›Full record

ArticleProtein science : a publication of the Protein Society2012

Glycine to glutamic acid misincorporation observed in a recombinant protein expressed by Escherichia coli cells.

Yunping Huang, Brian O'Mara, Matthew Conover, Richard Ludwig, Jinmei Fu, Li Tao, Zheng Jian Li, Siegfried Rieble, Michael J Grace, Reb J Russell

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Yunping HuangDepartment of Biologics Product & Process Development, Bristol-Myers Squibb Technical Operations, Princeton, New Jersey 08543, USA. yunping.huang@bms.com
Brian O'Mara
Matthew Conover
Richard Ludwig
Jinmei Fu
Li Tao
Zheng Jian Li
Siegfried Rieble
Michael J Grace
Reb J Russell
Bristol-Myers Squibb (United States) · USBristol-Myers Squibb (Sweden) · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel amino acid misincorporation, in which the intended glycine (Gly) residues were replaced by a glutamic acid (Glu), was observed in a recombinant protein expressed by Escherichia coli. The misincorporation was identified by peptide mapping and liquid chromatography-tandem mass spectrometric analysis on proteolyzed peptides of the protein and verified using the corresponding synthetic peptides containing the misincorporated residues. Analysis of the distribution of the misincorporated residues and their codon usage shows strong correlation between this misincorporation and the use of rarely used codon within the E. coli expression system. Results in this study suggest that the usage of the rare codon GGA has resulted in a Glu for Gly misincorporation.

Indexed as

CodonAmino Acid SequenceAmino Acid SubstitutionEscherichia coliGlutamic AcidGlycineMolecular Sequence DataPeptide FragmentsRecombinant ProteinsCodonGlutamic AcidGlycinePeptide FragmentsRecombinant Proteins

Identifiers

PMID22362707
PMCPMC3403460
OpenAlexW2091360947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.