Evidence map›Paper›PMID 22361729›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2012

Activation of two distinct Sox9-EGFP-expressing intestinal stem cell populations during crypt regeneration after irradiation.

Laurianne Van Landeghem, M Agostina Santoro, Adrienne E Krebs, Amanda T Mah, Jeffrey J Dehmer, Adam D Gracz, Brooks P Scull, Kirk McNaughton, Scott T Magness, P Kay Lund

Abstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 103 papers.

0numbers the graph read from it
0cells of the map it votes in
103citing papers in PubMed
7.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

103 citing papers in PubMed, 141 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Chronic arsenic exposure affects stromal cells and signaling in the small intestine in a sex-specific manner.Toxicological sciences : an official journal of the Society of Toxicology · 2024
    Article
  8. Article
  9. Review
  10. Prenatal stress induces changes in PAR2- and M3-dependent regulation of colon primitive cells.American journal of physiology. Gastrointestinal and liver physiology · 2022
    Article
  11. Review
  12. Intestinal Epithelial Regeneration in Response to Ionizing Irradiation.Journal of visualized experiments : JoVE · 2022
    Article
  13. Article
  14. HOPXAmerican journal of physiology. Gastrointestinal and liver physiology · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. SHP2 regulates the development of intestinal epithelium by modifying OSTERIXFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2021
    Article
  19. Article
  20. Use of organoids to study regenerative responses to intestinal damage.American journal of physiology. Gastrointestinal and liver physiology · 2019
    Review

43 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Laurianne Van LandeghemDepartment of Cellular and Molecular Physiology, University of North Carolina, Chapel Hill, NC 27599-7545, USA.
M Agostina Santoro
Adrienne E Krebs
Amanda T Mah
Jeffrey J Dehmer
Adam D Gracz
Brooks P Scull
Kirk McNaughton
Scott T Magness
P Kay Lund
University of North Carolina at Chapel Hill · US

Funding

PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROBERT S. SANDLER · 1985 to 2026
$30.5M
INTESTINAL ADAPTATION-ROLE OF HORMONES &GROWTH FACTORSR01DK040247 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DING, SHENGLI · 1989 to 2014
$4.5M
GROWTH FACTORS AND INFLAMMATORY BOWEL DISEASER01DK047769 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI LUND, PAULINE K · 1995 to 2013
$3.3M
Intestinal Stem/progenitor Cell Potency and CompetenceK01DK080181 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MAGNESS, SCOTT T · 2008 to 2010
$435k
NIDDK NIH HHS DK40247NIDDK NIH HHS K01-DK080181-01NIDDK NIH HHS P30 DK034987NIDDK NIH HHS R01 DK040247NIDDK NIH HHS R01 DK047769
6 · The paper itself

Abstract

Recent identification of intestinal epithelial stem cell (ISC) markers and development of ISC reporter mice permit visualization and isolation of regenerating ISCs after radiation to define their functional and molecular phenotypes. Previous studies in uninjured intestine of Sox9-EGFP reporter mice demonstrate that ISCs express low levels of Sox9-EGFP (Sox9-EGFP Low), whereas enteroendocrine cells (EEC) express high levels of Sox9-EGFP (Sox9-EGFP High). We hypothesized that Sox9-EGFP Low ISCs would expand after radiation, exhibit enhanced proliferative capacities, and adopt a distinct gene expression profile associated with rapid proliferation. Sox9-EGFP mice were given 14 Gy abdominal radiation and studied between days 3 and 9 postradiation. Radiation-induced changes in number, growth, and transcriptome of the different Sox9-EGFP cell populations were determined by histology, flow cytometry, in vitro culture assays, and microarray. Microarray confirmed that nonirradiated Sox9-EGFP Low cells are enriched for Lgr5 mRNA and mRNAs enriched in Lgr5-ISCs and identified additional putative ISC markers. Sox9-EGFP High cells were enriched for EEC markers, as well as Bmi1 and Hopx, which are putative markers of quiescent ISCs. Irradiation caused complete crypt loss, followed by expansion and hyperproliferation of Sox9-EGFP Low cells. From nonirradiated intestine, only Sox9-EGFP Low cells exhibited ISC characteristics of forming organoids in culture, whereas during regeneration both Sox9-EGFP Low and High cells formed organoids. Microarray demonstrated that regenerating Sox9-EGFP High cells exhibited transcriptomic changes linked to p53-signaling and ISC-like functions including DNA repair and reduced oxidative metabolism. These findings support a model in which Sox9-EGFP Low cells represent active ISCs, Sox9-EGFP High cells contain radiation-activatable cells with ISC characteristics, and both participate in crypt regeneration.

Indexed as

AnimalsCell ProliferationCells, CulturedGene ExpressionGreen Fluorescent ProteinsHomeodomain ProteinsJejunumMiceMice, TransgenicNuclear ProteinsPolycomb Repressive Complex 1Proto-Oncogene ProteinsReceptors, G-Protein-CoupledRegenerationRepressor ProteinsSOX9 Transcription FactorBmi1 protein, mouseenhanced green fluorescent proteinGreen Fluorescent ProteinsHod protein, mouseHomeodomain ProteinsLgr5 protein, mouseNuclear ProteinsPolycomb Repressive Complex 1Proto-Oncogene ProteinsReceptors, G-Protein-CoupledRepressor ProteinsSox9 protein, mouseSOX9 Transcription Factor

Identifiers

PMID22361729
PMCPMC3362093
OpenAlexW263786452

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.