Evidence map›Paper›PMID 22359511›Full record

ArticlePLoS genetics2012

Genomic restructuring in the Tasmanian devil facial tumour: chromosome painting and gene mapping provide clues to evolution of a transmissible tumour.

Janine E Deakin, Hannah S Bender, Anne-Maree Pearse, Willem Rens, Patricia C M O'Brien, Malcolm A Ferguson-Smith, Yuanyuan Cheng, Katrina Morris, Robyn Taylor, Andrew Stuart and 5 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 53 papers.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed
9.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Harmonized nonhuman cancer database.bioRxiv : the preprint server for biology · 2025
    Article
  3. Article
  4. Intergenomic signatures of coevolution between Tasmanian devils and an infectious cancer.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Article
  6. Article
  7. Review
  8. Review
  9. Prognostic role of METTL1 in glioma.Cancer cell international · 2021
    Article
  10. Article
  11. Article
  12. Profile of Jennifer Marshall Graves.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  13. Article
  14. Contemporary and historical selection in Tasmanian devils (Proceedings. Biological sciences · 2021
    Article
  15. Article
  16. Article
  17. Article
  18. A Devil of a Transmissible Cancer.Tropical medicine and infectious disease · 2020
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

15 authors at 6 institutions in 3 countries.

Janine E DeakinResearch School of Biology, The Australian National University, Canberra, Australia. janine.deakin@anu.edu.au
Hannah S Bender
Anne-Maree Pearse
Willem Rens
Patricia C M O'Brien
Malcolm A Ferguson-Smith
Yuanyuan Cheng
Katrina Morris
Robyn Taylor
Andrew Stuart
Katherine Belov
Chris T Amemiya
Elizabeth P Murchison
Anthony T Papenfuss
Jennifer A Marshall Graves
Australian National University · AUUniversity of Cambridge · GBUniversity of Sydney · AUBenaroya Research InstituteWalter and Eliza Hall Institute of Medical Research · AUWellcome Sanger Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Devil facial tumour disease (DFTD) is a fatal, transmissible malignancy that threatens the world's largest marsupial carnivore, the Tasmanian devil, with extinction. First recognised in 1996, DFTD has had a catastrophic effect on wild devil numbers, and intense research efforts to understand and contain the disease have since demonstrated that the tumour is a clonal cell line transmitted by allograft. We used chromosome painting and gene mapping to deconstruct the DFTD karyotype and determine the chromosome and gene rearrangements involved in carcinogenesis. Chromosome painting on three different DFTD tumour strains determined the origins of marker chromosomes and provided a general overview of the rearrangement in DFTD karyotypes. Mapping of 105 BAC clones by fluorescence in situ hybridisation provided a finer level of resolution of genome rearrangements in DFTD strains. Our findings demonstrate that only limited regions of the genome, mainly chromosomes 1 and X, are rearranged in DFTD. Regions rearranged in DFTD are also highly rearranged between different marsupials. Differences between strains are limited, reflecting the unusually stable nature of DFTD. Finally, our detailed maps of both the devil and tumour karyotypes provide a physical framework for future genomic investigations into DFTD.

Indexed as

Chromosome MappingGenomeAnimal DiseasesAnimalsChromosome PaintingClone CellsFacial NeoplasmsGene RearrangementKaryotypingMarsupialiaNeoplasm TransplantationSpecies Specificity

Identifiers

PMID22359511
PMCPMC3280961
OpenAlexW2054518038

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.