Evidence map›Paper›PMID 22359502›Full record

ArticlePLoS pathogens2012

Portrait of Candida albicans adherence regulators.

Jonathan S Finkel, Wenjie Xu, David Huang, Elizabeth M Hill, Jigar V Desai, Carol A Woolford, Jeniel E Nett, Heather Taff, Carmelle T Norice, David R Andes and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 157 papers.

0numbers the graph read from it
0cells of the map it votes in
157citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

157 citing papers in PubMed, 228 citations in OpenAlex.

  1. Article
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  9. Review
  10. Microorganisms · 2024
    Review
  11. Journal of fungi (Basel, Switzerland) · 2024
    Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Transcriptional expression ofMicrobiology spectrum · 2024
    Article
  20. Article

97 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jonathan S FinkelDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Wenjie Xu
David Huang
Elizabeth M Hill
Jigar V Desai
Carol A Woolford
Jeniel E Nett
Heather Taff
Carmelle T Norice
David R Andes
Frederick Lanni
Aaron P Mitchell
Carnegie Mellon University · USUniversity of Wisconsin–Madison · USColumbia University · US

Funding

MEDICAL SCIENTIST TRAINING PROGRAMT32GM007367 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI REINER, STEVEN L · 1985 to 2021
$25.1M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
RESEARCH TRAINING IN HEMATOLOGYT32HL007899 · NHLBI · UNIVERSITY OF WISCONSIN-MADISON · PI Jane Ellen Churpek · 1998 to 2026
$8.2M
Vesicle-mediated drug resistance of Candida albicans biofilmR01AI073289 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI ANDES, DAVID R, MITCHELL, AARON P · 2008 to 2025
$7.9M
GENETIC CONTROL OF C. ALBICANS BIOFILM FORMATIONR01AI067703 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MITCHELL, AARON P · 2006 to 2014
$3.2M
The Regulation of Biofilm Formation in Fungal PathogensF32AI085521 · NIAID · CARNEGIE-MELLON UNIVERSITY · PI FINKEL, JONATHAN SEWELL · 2009 to 2010
$93k
NHLBI NIH HHS T32 HL007899NIAID NIH HHS F32 AI085521NIAID NIH HHS R01 AI067703NIAID NIH HHS R01 AI073289NIGMS NIH HHS 2T32 GM007367NIGMS NIH HHS T32 GM007367NIGMS NIH HHS T32 GM008692
6 · The paper itself

Abstract

Cell-substrate adherence is a fundamental property of microorganisms that enables them to exist in biofilms. Our study focuses on adherence of the fungal pathogen Candida albicans to one substrate, silicone, that is relevant to device-associated infection. We conducted a mutant screen with a quantitative flow-cell assay to identify thirty transcription factors that are required for adherence. We then combined nanoString gene expression profiling with functional analysis to elucidate relationships among these transcription factors, with two major goals: to extend our understanding of transcription factors previously known to govern adherence or biofilm formation, and to gain insight into the many transcription factors we identified that were relatively uncharacterized, particularly in the context of adherence or cell surface biogenesis. With regard to the first goal, we have discovered a role for biofilm regulator Bcr1 in adherence, and found that biofilm regulator Ace2 is a major functional target of chromatin remodeling factor Snf5. In addition, Bcr1 and Ace2 share several target genes, pointing to a new connection between them. With regard to the second goal, our findings reveal existence of a large regulatory network that connects eleven adherence regulators, the zinc-response regulator Zap1, and approximately one quarter of the predicted cell surface protein genes in this organism. This limited yet sensitive glimpse of mutant gene expression changes had thus defined one of the broadest cell surface regulatory networks in C. albicans.

Indexed as

Gene Expression ProfilingBiofilmsCandida albicansCell AdhesionFungal ProteinsGenes, FungalFungal Proteins

Identifiers

PMID22359502
PMCPMC3280983
OpenAlexW1980587680

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.