Evidence map›Paper›PMID 22357627›Full record

ArticleCarcinogenesis2012

Evaluation of 19 susceptibility loci of breast cancer in women of African ancestry.

Dezheng Huo, Yonglan Zheng, Temidayo O Ogundiran, Clement Adebamowo, Katherine L Nathanson, Susan M Domchek, Timothy R Rebbeck, Michael S Simon, Esther M John, Anselm Hennis and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Carcinogenesis, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 10 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 10 pooled it
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 10 syntheses or guidelines pooled it, 70 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 3 countries.

Dezheng HuoDepartment of Health Studies, University of Chicago, 5841 South Maryland Avenue, MC 2007, Chicago, IL 60637, USA. dhuo@health.bsd.uchicago.edu
Yonglan Zheng
Temidayo O Ogundiran
Clement Adebamowo
Katherine L Nathanson
Susan M Domchek
Timothy R Rebbeck
Michael S Simon
Esther M John
Anselm Hennis
Barbara Nemesure
Suh-Yuh Wu
M Cristina Leske
Stefan Ambs
Qun Niu
Jing Zhang
Nancy J Cox
Olufunmilayo I Olopade
University of Chicago · USStony Brook University · USCancer Prevention Institute of California · USNational Cancer Institute · USThe Barbara Ann Karmanos Cancer Institute · USUniversity of Ibadan · NGUniversity of Maryland, Baltimore · USUniversity of Pennsylvania · USUniversity of the West Indies · BB

Funding

Northern California Cooperative Family Registry for Breast CancerU01CA069417 · NCI · NORTHERN CALIFORNIA CANCER CENTER · PI JOHN, ESTHER M. · 1995 to 2010
$22.4M
Novel Markers for Disease Outcome in Breast CancerZIABC010887 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI AMBS, STEFAN · 2009 to 2025
$11.5M
RACE VARIABILITY IN GENOTYPIC DETERMINANTS OF BREAST CAP01CA082707 · NCI · UNIVERSITY OF PENNSYLVANIA · PI REBBECK, TIMOTHY R · 2000 to 2004
$11.0M
Replication Study of Breast Cancer Susceptibility Genes in BlacksR01CA141712 · NCI · UNIVERSITY OF CHICAGO · PI HUO, DEZHENG · 2009 to 2010
$500k
NCI NIH HHS HHSN261200900010CNCI NIH HHS P01 CA082707NCI NIH HHS P01CA82707NCI NIH HHS R01 CA141712NCI NIH HHS R01CA141712NCI NIH HHS RFA-CA-06-503NCI NIH HHS U01 CA069417NCI NIH HHS U01 CA69417
6 · The paper itself

Abstract

Multiple breast cancer susceptibility loci have been identified in genome-wide association studies (GWAS) in populations of European and Asian ancestry using array chips optimized for populations of European ancestry. It is important to examine whether these loci are associated with breast cancer risk in women of African ancestry. We evaluated 25 single nucleotide polymorphisms (SNPs) at 19 loci in a pooled case-control study of breast cancer, which included 1509 cases and 1383 controls. Cases and controls were enrolled in Nigeria, Barbados and the USA; all women were of African ancestry. We found significant associations for three SNPs, which were in the same direction and of similar magnitude as those reported in previous fine-mapping studies in women of African ancestry. The allelic odds ratios were 1.24 [95% confidence interval (CI): 1.04-1.47; P = 0.018] for the rs2981578-G allele (10q26/FGFR2), 1.34 (95% CI: 1.10-1.63; P = 0.0035) for the rs9397435-G allele (6q25) and 1.12 (95% CI: 1.00-1.25; P = 0.04) for the rs3104793-C allele (16q12). Although a significant association was observed for an additional index SNP (rs3817198), it was in the opposite direction to prior GWAS studies. In conclusion, this study highlights the complexity of applying current GWAS findings across racial/ethnic groups, as none of GWAS-identified index SNPs could be replicated in women of African ancestry. Further fine-mapping studies in women of African ancestry will be needed to reveal additional and causal variants for breast cancer.

Indexed as

Genetic Predisposition to DiseaseAdultBlack PeopleBreast NeoplasmsCase-Control StudiesFemaleGenome-Wide Association StudyHumansMiddle AgedPolymorphism, Single Nucleotide

Identifiers

PMID22357627
PMCPMC3324445
OpenAlexW2107431534

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.