Evidence map›Paper›PMID 22357284›Full record

ArticleJournal of virology2012

Mycobacteriophage Marvin: a new singleton phage with an unusual genome organization.

Catherine Mageeney, Welkin H Pope, Melinda Harrison, Deborah Moran, Trevor Cross, Deborah Jacobs-Sera, Roger W Hendrix, David Dunbar, Graham F Hatfull

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  4. Article
  5. Review
  6. Review
  7. Mycobacteriophages.Microbiology spectrum · 2018
    Review
  8. Mass Spectrometry as a Tool to Enhance "-omics" Education.Journal of microbiology & biology education · 2018
    Article
  9. Article
  10. Article
  11. Article
  12. Molecular Genetics of Mycobacteriophages.Microbiology spectrum · 2014
    Article
  13. Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Catherine MageeneyCabrini College, Department of Science, Radnor, Pennsylvania, USA.
Welkin H Pope
Melinda Harrison
Deborah Moran
Trevor Cross
Deborah Jacobs-Sera
Roger W Hendrix
David Dunbar
Graham F Hatfull
Cabrini University · USUniversity of Pittsburgh · US

Funding

Mycobacteriophage as an emerging model organismR24GM093901 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HATFULL, GRAHAM F. · 2011 to 2014
$1.1M
Howard Hughes Medical InstituteNIGMS NIH HHS GM093901NIGMS NIH HHS R24 GM093901
6 · The paper itself

Abstract

Mycobacteriophages represent a genetically diverse group of viruses that infect mycobacterial hosts. Although more than 80 genomes have been sequenced, these still poorly represent the likely diversity of the broader population of phages that can infect the host, Mycobacterium smegmatis mc(2)155. We describe here a newly discovered phage, Marvin, which is a singleton phage, having no previously identified close relatives. The 65,100-bp genome contains 107 predicted protein-coding genes arranged in a noncanonical genomic architecture in which a subset of the minor tail protein genes are displaced about 20 kbp from their typical location, situated among nonstructural genes anticipated to be expressed early in lytic growth. Marvin is not temperate, and stable lysogens cannot be recovered from infections, although the presence of a putative xis gene suggests that Marvin could be a relatively recent derivative of a temperate parent. The Marvin genome is replete with novel genes not present in other mycobacteriophage genomes, and although most are of unknown function, the presence of amidoligase and glutamine amidotransferase genes suggests intriguing possibilities for the interactions of Marvin with its mycobacterial hosts.

Indexed as

Genome, ViralDNA, ViralGene OrderMolecular Sequence AnnotationMycobacteriophagesMycobacterium smegmatisSequence Analysis, DNAViral ProteinsVirionDNA, ViralViral Proteins

Identifiers

PMID22357284
PMCPMC3347389
OpenAlexW1973986985

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.