Evidence map›Paper›PMID 22357274›Full record

ArticleJournal of virology2012

Closely related archaeal Haloarcula hispanica icosahedral viruses HHIV-2 and SH1 have nonhomologous genes encoding host recognition functions.

Salla T Jaakkola, Reetta K Penttinen, Silja T Vilén, Matti Jalasvuori, Gunilla Rönnholm, Jaana K H Bamford, Dennis H Bamford, Hanna M Oksanen

Erratum issuedAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed.

  1. Review
  2. ICTV Virus Taxonomy Profile:The Journal of general virology · 2023
    Article
  3. Article
  4. Viruses of theFrontiers in microbiology · 2023
    Review
  5. Article
  6. JMT-1: a novel, spherical lytic halotolerant phage isolated from Yuncheng saline lake.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2018
    Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. A virus of hyperthermophilic archaea with a unique architecture among DNA viruses.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  14. Article
  15. Article
  16. Archaeal extrachromosomal genetic elements.Microbiology and molecular biology reviews : MMBR · 2015
    Review
  17. Review
  18. Article
  19. Viruses of haloarchaea.Life (Basel, Switzerland) · 2014
    Review
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

8 authors.

Salla T JaakkolaInstitute of Biotechnology and Department of Biosciences, University of Helsinki, Helsinki, Finland.
Reetta K Penttinen
Silja T Vilén
Matti Jalasvuori
Gunilla Rönnholm
Jaana K H Bamford
Dennis H Bamford
Hanna M Oksanen

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Studies on viral capsid architectures and coat protein folds have revealed the evolutionary lineages of viruses branching to all three domains of life. A widespread group of icosahedral tailless viruses, the PRD1-adenovirus lineage, was the first to be established. A double β-barrel fold for a single major capsid protein is characteristic of these viruses. Similar viruses carrying genes coding for two major capsid proteins with a more complex structure, such as Thermus phage P23-77 and haloarchaeal virus SH1, have been isolated. Here, we studied the host range, life cycle, biochemical composition, and genomic sequence of a new isolate, Haloarcula hispanica icosahedral virus 2 (HHIV-2), which resembles SH1 despite being isolated from a different location. Comparative analysis of these viruses revealed that their overall architectures are very similar except that the genes for the receptor recognition vertex complexes are unrelated even though these viruses infect the same hosts.

Indexed as

Genes, ViralArchaeal VirusesBiological EvolutionCapsid ProteinsGene OrderGenome, ViralHaloarculaHost-Pathogen InteractionsMolecular Sequence DataSequence HomologyVirionVirulenceCapsid Proteins

Identifiers

PMID22357274
PMCPMC3347397

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.