Evidence map›Paper›PMID 22355706›Full record

ArticleScientific reports2011

Fractal-like distributions over the rational numbers in high-throughput biological and clinical data.

Vladimir Trifonov, Laura Pasqualucci, Riccardo Dalla-Favera, Raul Rabadan

Abstract read
In one paragraph

Article in Scientific reports, 2011. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Vladimir TrifonovDepartment of Biomedical Informatics, Center for Computational Biology and Bioinformatics, Columbia University, New York, NY 10032, USA. vladot@c2b2.columbia.edu
Laura Pasqualucci
Riccardo Dalla-Favera
Raul Rabadan

Funding

Viral Pathogenesis and TherapeuticsU54AI057158 · NIAID · WADSWORTH CENTER · PI LEVY, DAVID E · 2003 to 2014
$100.8M
The Role of BCL-6 in Berminal Center FormationP01CA092625 · NCI · DANA-FARBER CANCER INSTITUTE · PI SHIPP, MARGARET A · 2001 to 2011
$32.9M
AIDS-ASSOCIATED LYMPHOPROLIFERATIVE DISORDERS/MOLEC BIOR37CA037295 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI DALLA-FAVERA, RICCARDO · 1989 to 2011
$4.1M
Integrated discovery and hypothesis testing of new associations in rare diseasesR01LM010140 · NLM · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI RABADAN, RAUL · 2009 to 2010
$1.1M
AIDS ASSOCIATED LYMPHOPROLIFERATIVE DISORDERSR01CA037295 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DALLA-FAVERA, RICCARDO · 1997 to 2001
$705k
NCI NIH HHS CA-092625NCI NIH HHS CA-37295NCI NIH HHS P01 CA092625NCI NIH HHS R01 CA037295NCI NIH HHS R37 CA037295NIAID NIH HHS U54 AI057158NLM NIH HHS R01 LM010140NLM NIH HHS R01LM010140-01
6 · The paper itself

Abstract

Recent developments in extracting and processing biological and clinical data are allowing quantitative approaches to studying living systems. High-throughput sequencing (HTS), expression profiles, proteomics, and electronic health records (EHR) are some examples of such technologies. Extracting meaningful information from those technologies requires careful analysis of the large volumes of data they produce. In this note, we present a set of fractal-like distributions that commonly appear in the analysis of such data. The first set of examples are drawn from a HTS experiment. Here, the distributions appear as part of the evaluation of the error rate of the sequencing and the identification of tumorogenic genomic alterations. The other examples are obtained from risk factor evaluation and analysis of relative disease prevalence and co-mordbidity as these appear in EHR. The distributions are also relevant to identification of subclonal populations in tumors and the study of quasi-species and intrahost diversity of viral populations.

Indexed as

Computational BiologyData Interpretation, StatisticalComorbidityFractalsGene Expression ProfilingGene Expression RegulationGenetic VariationGenome, HumanGenomicsHigh-Throughput Nucleotide SequencingHumansInfluenza, HumanLymphoma, Large B-Cell, DiffuseMedical Records Systems, ComputerizedModels, StatisticalPrevalence

Identifiers

PMID22355706
PMCPMC3240948

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.