Evidence map›Paper›PMID 22355106›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Rapid, efficient functional characterization and recovery of HIV-specific human CD8+ T cells using microengraving.

Navin Varadarajan, Douglas S Kwon, Kenneth M Law, Adebola O Ogunniyi, Melis N Anahtar, James M Richter, Bruce D Walker, J Christopher Love

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
6.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Single-cell cloning and its approaches.Frontiers in cell and developmental biology · 2025
    Review
  5. Article
  6. Article
  7. Review
  8. Microraft arrays for serial-killer CD19 chimeric antigen receptor T cells and single cell isolation.Cytometry. Part A : the journal of the International Society for Analytical Cytology · 2023
    Article
  9. Review
  10. T cell antigen discovery.Nature methods · 2021
    Review
  11. Review
  12. Article
  13. Review
  14. Review
  15. Article
  16. Single-cell analysis targeting the proteome.Nature reviews. Chemistry · 2020
    Review
  17. Review
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Navin VaradarajanDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Douglas S Kwon
Kenneth M Law
Adebola O Ogunniyi
Melis N Anahtar
James M Richter
Bruce D Walker
J Christopher Love
Ragon Institute of MGH, MIT and Harvard · USMassachusetts Institute of Technology · USHoward Hughes Medical Institute · USMassachusetts General Hospital · USOffice of Infectious Diseases · US

Funding

WRCE Nonhuman Primate CoreU54AI057156 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI WALKER, DAVID H · 2003 to 2013
$102.6M
The impact of HIV viral diversity and cellular immunity on HIV pathogenesisP30AI060354 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI ROBERT A. PARKER · 2004 to 2026
$94.4M
Medical Scientist Training ProgramT32GM007753 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALENSKY, LOREN DAVID · 1985 to 2021
$50.0M
Interdepartmental Biotechnology Training ProgramT32GM008334 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WITTRUP, KARL DANE · 1989 to 2018
$15.2M
Gut mucosal immunity to HIV-1 in controlled and progressive infectionK08AI084546 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI KWON, DOUGLAS · 2009 to 2012
$498k
Howard Hughes Medical InstituteNIAID NIH HHS K08 AI084546NIAID NIH HHS P30 AI060354NIAID NIH HHS U54 AI057156NIAID NIH HHS U54-AI057156NIGMS NIH HHS 5T32GM008334NIGMS NIH HHS T32 GM007753NIGMS NIH HHS T32 GM008334
6 · The paper itself

Abstract

The nature of certain clinical samples (tissue biopsies, fluids) or the subjects themselves (pediatric subjects, neonates) often constrain the number of cells available to evaluate the breadth of functional T-cell responses to infections or therapeutic interventions. The methods most commonly used to assess this functional diversity ex vivo and to recover specific cells to expand in vitro usually require more than 10(6) cells. Here we present a process to identify antigen-specific responses efficiently ex vivo from 10(4)-10(5) single cells from blood or mucosal tissues using dense arrays of subnanoliter wells. The approach combines on-chip imaging cytometry with a technique for capturing secreted proteins--called "microengraving"--to enumerate antigen-specific responses by single T cells in a manner comparable to conventional assays such as ELISpot and intracellular cytokine staining. Unlike those assays, however, the individual cells identified can be recovered readily by micromanipulation for further characterization in vitro. Applying this method to assess HIV-specific T-cell responses demonstrates that it is possible to establish clonal CD8(+) T-cell lines that represent the most abundant specificities present in circulation using 100- to 1,000-fold fewer cells than traditional approaches require and without extensive genotypic analysis a priori. This rapid (<24 h), efficient, and inexpensive process should improve the comparative study of human T-cell immunology across ages and anatomic compartments.

Indexed as

CD3 ComplexCD8-Positive T-LymphocytesCloning, MolecularEnzyme-Linked Immunosorbent AssayEpitopesGenotypeHIVHIV InfectionsHLA AntigensHumansInterferon-gammaLab-On-A-Chip DevicesMicromanipulationNanotechnologyT-LymphocytesCD3 ComplexEpitopesHLA AntigensInterferon-gamma

Identifiers

PMID22355106
PMCPMC3309713
OpenAlexW2170518560

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.