Evidence map›Paper›PMID 22351933›Full record

ArticleThe Journal of experimental medicine2012

Agammaglobulinemia and absent B lineage cells in a patient lacking the p85α subunit of PI3K.

Mary Ellen Conley, A Kerry Dobbs, Anita M Quintana, Amma Bosompem, Yong-Dong Wang, Elaine Coustan-Smith, Amber M Smith, Elena E Perez, Peter J Murray

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in The Journal of experimental medicine, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed, 2 pooled it
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed, 2 syntheses or guidelines pooled it, 210 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Review
  16. Review
  17. Review
  18. Review
  19. Review
  20. Article

46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Mary Ellen ConleyDepartment of Pediatrics, University of Tennessee College of Medicine, Memphis, TN 38163, USA. mconley@uthsc.edu
A Kerry Dobbs
Anita M Quintana
Amma Bosompem
Yong-Dong Wang
Elaine Coustan-Smith
Amber M Smith
Elena E Perez
Peter J Murray
St. Jude Children's Research Hospital · USUniversity of South Florida St. Petersburg · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
GENETIC ASPECTS OF IMMUNODEFICIENCIESR37AI025129 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CONLEY, MARY ELLEN · 1999 to 2007
$2.7M
NIH Genetic Aspects of ImmunodeficiencyR56AI025129 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CONLEY, MARY ELLEN · 2010 to 2010
$507k
GENETIC ASPECTS OF IMMUNODEFICIENCYR01AI025129 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI CONLEY, MARY ELLEN · 1987 to 1998
–
NCI NIH HHS P30 CA021765NCI NIH HHS P30 CA21765NIAID NIH HHS AI25129NIAID NIH HHS R37 AI025129NIAID NIH HHS R56 AI025129
6 · The paper itself

Abstract

Whole exome sequencing was used to determine the causative gene in patients with B cell defects of unknown etiology. A homozygous premature stop codon in exon 6 of PIK3R1 was identified in a young woman with colitis and absent B cells. The mutation results in the absence of p85α but normal expression of the p50α and p55α regulatory subunits of PI3K. Bone marrow aspirates from the patient showed <0.1% CD19(+) B cells with normal percentages of TdT(+)VpreB(+)CD19(-) B cell precursors. This developmental block is earlier than that seen in patients with defects in the B cell receptor signaling pathway or in a strain of engineered mice with a similar defect in p85α. The number and function of the patient's T cells were normal. However, Western blot showed markedly decreased p110δ, as well as absent p85α, in patient T cells, neutrophils, and dendritic cells. The patient had normal growth and development and normal fasting glucose and insulin. Mice with p85α deficiency have insulin hypersensitivity, defective platelet function, and abnormal mast cell development. In contrast, the absence of p85α in the patient results in an early and severe defect in B cell development but minimal findings in other organ systems.

Indexed as

AgammaglobulinemiaAmino Acid SequenceAnimalsBase SequenceB-LymphocytesCase-Control StudiesCell DifferentiationClass Ia Phosphatidylinositol 3-KinaseCodon, NonsenseCytokinesDendritic CellsDNA Mutational AnalysisExonsFemaleHomozygoteHumansClass Ia Phosphatidylinositol 3-KinaseCodon, NonsenseCytokines

Identifiers

PMID22351933
PMCPMC3302225
OpenAlexW2060519150

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.