ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2012
Transcriptome characterization and sequencing-based identification of salt-responsive genes in Millettia pinnata, a semi-mangrove plant.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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36 citing papers in PubMed, 73 citations in OpenAlex.
- Molecular cloning and characterization of a salt overly sensitive3 (SOS3) gene from the halophyte Pongamia.Plant molecular biology · 2024Article
- Genetic and molecular mechanisms underlying mangrove adaptations to intertidal environments.iScience · 2022Review
- Comparative transcriptome analysis unveiling reactive oxygen species scavenging system ofFrontiers in plant science · 2022Article
- A C2H2-Type Zinc-Finger Protein fromInternational journal of molecular sciences · 2021Article
- Isolation and Functional Characterization of a Salt-Responsive Calmodulin-Like GeneInternational journal of molecular sciences · 2021Article
- Combined Transcriptome and Proteome Analysis to Elucidate Salt Tolerance Strategies of the HalophyteFrontiers in plant science · 2021Article
- Development of EST-SSR markers forPhysiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- The Role of Transposable Elements in Pongamia Unigenes and Protein Diversity.Molecular biotechnology · 2020Article
- Unravelling the MicroRNA-Mediated Gene Regulation in Developing Pongamia Seeds by High-Throughput Small RNA Profiling.International journal of molecular sciences · 2019Article
- Temporal transcriptome profiling of developing seeds reveals a concerted gene regulation in relation to oil accumulation in Pongamia (Millettia pinnata).BMC plant biology · 2018Article
- Identification and characterization of evolutionarily conserved alternative splicing events in a mangrove genus Sonneratia.Scientific reports · 2018Article
- Dark period transcriptomic and metabolic profiling of two diversePlant direct · 2018Article
- Transcriptomics analysis of salt stress tolerance in the roots of the mangrove Avicennia officinalis.Scientific reports · 2017Article
- Comparative Analysis of Transcriptomes in Rhizophoraceae Provides Insights into the Origin and Adaptive Evolution of Mangrove Plants in Intertidal Environments.Frontiers in plant science · 2017Article
- Transcriptional Responses of Chilean Quinoa (Frontiers in plant science · 2017Article
- Unravelling molecular mechanisms from floral initiation to lipid biosynthesis in a promising biofuel tree species, Pongamia pinnata using transcriptome analysis.Scientific reports · 2016Article
- Andrographis paniculata transcriptome provides molecular insights into tissue-specific accumulation of medicinal diterpenes.BMC genomics · 2015Article
- Next-generation transcriptome analysis in transgenic birch overexpressing and suppressing APETALA1 sheds lights in reproduction development and diterpenoid biosynthesis.Plant cell reports · 2015Article
- Deep sequencing-based characterization of transcriptome of trifoliate orange (Poncirus trifoliata (L.) Raf.) in response to cold stress.BMC genomics · 2015Article
- RNA-seq analysis of the response of the halophyte, Mesembryanthemum crystallinum (ice plant) to high salinity.PloS one · 2015Article
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Authors and funding
7 authors at 3 institutions in 1 country.
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Abstract
Semi-mangroves form a group of transitional species between glycophytes and halophytes, and hold unique potential for learning molecular mechanisms underlying plant salt tolerance. Millettia pinnata is a semi-mangrove plant that can survive a wide range of saline conditions in the absence of specialized morphological and physiological traits. By employing the Illumina sequencing platform, we generated ~192 million short reads from four cDNA libraries of M. pinnata and processed them into 108,598 unisequences with a high depth of coverage. The mean length and total length of these unisequences were 606 bp and 65.8 Mb, respectively. A total of 54,596 (50.3%) unisequences were assigned Nr annotations. Functional classification revealed the involvement of unisequences in various biological processes related to metabolism and environmental adaptation. We identified 23,815 candidate salt-responsive genes with significantly differential expression under seawater and freshwater treatments. Based on the reverse transcription-polymerase chain reaction (RT-PCR) and real-time PCR analyses, we verified the changes in expression levels for a number of candidate genes. The functional enrichment analyses for the candidate genes showed tissue-specific patterns of transcriptome remodelling upon salt stress in the roots and the leaves. The transcriptome of M. pinnata will provide valuable gene resources for future application in crop improvement. In addition, this study sets a good example for large-scale identification of salt-responsive genes in non-model organisms using the sequencing-based approach.
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