ArticlePlant molecular biology2012
High-throughput sequencing-based gene profiling on multi-staged fruit development of date palm (Phoenix dactylifera, L.).
Article in Plant molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed.
- Comparative Genomics and Draft Genome Assembly of the Elite Tunisian Date Palm Cultivar Deglet Nour: Insights into the Genetic Variations Linked to Fruit Ripening and Quality Traits.International journal of molecular sciences · 2025Article
- Date palm transcriptome analysis provides new insights on changes in response to high salt stress of colonized roots with the endophytic fungusFrontiers in plant science · 2024Article
- De novo assembly and comparative genome analysis for polyhydroxyalkanoates-producing Bacillus sp. BNPI-92 strain.Journal, genetic engineering & biotechnology · 2023Article
- Recent advances in date palm genomics: A comprehensive review.Frontiers in genetics · 2022Review
- Transcriptome sequencing and differential expression analysis of seed starch accumulation in Chinese chestnut Metaxenia.BMC genomics · 2021Article
- Transcriptomic analysis of Dubas bug (Ommatissus lybicus Bergevin) infestation to Date Palm.Scientific reports · 2020Article
- Effect of feeding different levels of discarded date palm (Phoenix dactylifera) on digestibility, milk yield, and composition in Damani sheep.Tropical animal health and production · 2019Article
- Genomic Insights into Date Palm Origins.Genes · 2018Review
- Transcriptome profiling of litchi leaves in response to low temperature reveals candidate regulatory genes and key metabolic events during floral induction.BMC genomics · 2017Article
- CRISPR/Cas9: A Practical Approach in Date Palm Genome Editing.Frontiers in plant science · 2017Review
- Gene transcript profiles in the desert plant Nitraria tangutorum during fruit development and ripening.Molecular genetics and genomics : MGG · 2016Article
- De novo transcriptome sequence assembly from coconut leaves and seeds with a focus on factors involved in RNA-directed DNA methylation.G3 (Bethesda, Md.) · 2014Article
- Dynamic changes in the date palm fruit proteome during development and ripening.Horticulture research · 2014Article
- Transcriptional dynamics of the developing sweet cherry (Prunus avium L.) fruit: sequencing, annotation and expression profiling of exocarp-associated genes.Horticulture research · 2014Article
- Article
- De novo assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading.BMC genomics · 2013Article
- Genome sequence of the date palm Phoenix dactylifera L.Nature communications · 2013Article
- Large-scale collection and annotation of gene models for date palm (Phoenix dactylifera, L.).Plant molecular biology · 2012Article
Corrections and comments
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Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Date palm provides both staple food and gardening for the Middle East and North African countries for thousands of years. Its fruits have diversified significantly, such as nutritional content, size, length, weight color, and ripping process. Dates palm represent an excellent model system for the study of fruit development and diversity of fruit-bearing palm species that produce the most versatile fruit types as compared to other plant families. Using Roche/454 GS FLX instrument, we acquired 7.6 million sequence tags from seven fruiting stages (F1-F7). Over 99% of the raw reads are assembled, and the numbers of isotigs (equivalent to transcription units or unigenes) range from 30,684 to 40,378 during different fruiting stages. We annotated isotigs using BLASTX and BLASTN, and mapped 74% of the isotigs to known functional sequences or genes. Based on gene ontology categorization and pathway analysis, we have identified 10 core cell division genes, 18 ripening related genes, and 7 starch metabolic enzymes, which are involved as nutrition storage and sugar/starch metabolisms. We noticed that many metabolic pathways vary significantly during fruit development, and carbohydrate metabolism (especially sugar synthesis) is particularly prominent during fruit ripening. Transcriptomics study on various fruiting stages of date palm shows complicated metabolic activities during fruit development, ripening, synthesis and accumulation of starch enzymes and other related sugars. Most Genes are highly expressed in early stages of development, while late developmental stages are critical for fruit ripening including most of the metabolism associated ones.
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