Evidence map›Paper›PMID 22350204›Full record

ArticleExtremophiles : life under extreme conditions2012

Assigning a function to a conserved archaeal metallo-β-lactamase from Haloferax volcanii.

Susan Fischer, Simona John von Freyend, Anice Sabag-Daigle, Charles J Daniels, Thorsten Allers, Anita Marchfelder

Open access · hybridAbstract read
In one paragraph

Article in Extremophiles : life under extreme conditions, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Overview of the genetic tools in the Archaea.Frontiers in microbiology · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Susan FischerBiology II, University of Ulm, Albert-Einstein-Allee 11, 89069, Ulm, Germany.
Simona John von Freyend
Anice Sabag-Daigle
Charles J Daniels
Thorsten Allers
Anita Marchfelder
The Ohio State University · USUniversität Ulm · DEUniversity of Melbourne · AUUniversity of Nottingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The metallo-β-lactamase family of enzymes comprises a large group of proteins with diverse functions in the metabolism of the cell. Among others, this superfamily contains proteins which are involved in DNA and RNA metabolism, acting as nucleases in e.g. repair and maturation. Many proteins have been annotated in prokaryotic genomes as being potential metallo-β-lactamases, but very often the function has not been proven. The protein HVO_2763 from Haloferax volcanii is such a potential metallo-β-lactamase. HVO_2763 has sequence similarity to the metallo-β-lactamase tRNase Z, a tRNA 3' processing endonuclease. Here, we report the characterisation of this metallo-β-lactamase HVO_2763 in the halophilic archaeon Haloferax volcanii. Using different in vitro assays with the recombinant HVO_2763, we could show that the protein does not have tRNA 3' processing or exonuclease activity. According to transcriptome analyses of the HVO_2763 deletion strain, expression of proteins involved in membrane transport is downregulated in the mutant. Therefore, HVO_2763 might be involved directly or indirectly in membrane transport.

Indexed as

Amino Acid Sequencebeta-LactamasesBlotting, NorthernDNAEndoribonucleasesEscherichia coliExonucleasesGene DeletionGenomeHaloferax volcaniiMetalsMolecular Sequence DataOligonucleotide Array Sequence AnalysisPhenotypeRecombinant ProteinsRNA, Archaealbeta-LactamasesDNAEndoribonucleasesExonucleasesMetalsRecombinant ProteinsRNA, ArchaealRNA, TransfertRNA 3'-processing endonuclease

Identifiers

PMID22350204
PMCPMC3296008
OpenAlexW2029766510

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.