Evidence map›Paper›PMID 22346750›Full record

ArticlePLoS pathogens2012

Genome-wide transcriptional profiling of appressorium development by the rice blast fungus Magnaporthe oryzae.

Darren M Soanes, Apratim Chakrabarti, Konrad H Paszkiewicz, Angus L Dawe, Nicholas J Talbot

Abstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed.

  1. Article
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  3. Review
  4. Impact ofBiochemistry · 2024
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  9. Article
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  11. Characterization of a unique polysaccharide monooxygenase from the plant pathogenProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  12. Article
  13. Article
  14. Microorganisms · 2022
    Review
  15. Review
  16. Gapless reference genome assembly ofFrontiers in plant science · 2022
    Article
  17. Article
  18. Article
  19. Article
  20. Review

34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Darren M SoanesCollege of Life and Environmental Sciences, University of Exeter, Exeter, United Kingdom.
Apratim Chakrabarti
Konrad H Paszkiewicz
Angus L Dawe
Nicholas J Talbot

Funding

Biotechnology and Biological Sciences Research Council BB/H018727/1
6 · The paper itself

Abstract

The rice blast fungus Magnaporthe oryzae is one of the most significant pathogens affecting global food security. To cause rice blast disease the fungus elaborates a specialised infection structure called an appressorium. Here, we report genome wide transcriptional profile analysis of appressorium development using next generation sequencing (NGS). We performed both RNA-Seq and High-Throughput SuperSAGE analysis to compare the utility of these procedures for identifying differential gene expression in M. oryzae. We then analysed global patterns of gene expression during appressorium development. We show evidence for large-scale gene expression changes, highlighting the role of autophagy, lipid metabolism and melanin biosynthesis in appressorium differentiation. We reveal the role of the Pmk1 MAP kinase as a key global regulator of appressorium-associated gene expression. We also provide evidence for differential expression of transporter-encoding gene families and specific high level expression of genes involved in quinate uptake and utilization, consistent with pathogen-mediated perturbation of host metabolism during plant infection. When considered together, these data provide a comprehensive high-resolution analysis of gene expression changes associated with cellular differentiation that will provide a key resource for understanding the biology of rice blast disease.

Indexed as

Acetyl Coenzyme AAutophagyFungal ProteinsGene Expression Regulation, FungalGenome, FungalHigh-Throughput Nucleotide SequencingHost-Pathogen InteractionsLipid MetabolismMagnaportheMelaninsMitogen-Activated Protein KinasesMutationOryzaPlant DiseasesPlant LeavesSignal TransductionAcetyl Coenzyme AFungal ProteinsMelaninsMitogen-Activated Protein KinasesPmk1 protein, Magnaporthe grisea

Identifiers

PMID22346750
PMCPMC3276559

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.