Evidence map›Paper›PMID 22345637›Full record

ArticleJournal of experimental botany2012

Protein-protein interactions as a proxy to monitor conformational changes and activation states of the tomato resistance protein I-2.

Ewa Lukasik-Shreepaathy, Jack H Vossen, Wladimir I L Tameling, Marianne J de Vroomen, Ben J C Cornelissen, Frank L W Takken

Abstract read
In one paragraph

Article in Journal of experimental botany, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Ewa Lukasik-ShreepaathyMolecular Plant Pathology, Swammerdam Institute for Life Sciences, University of Amsterdam, Science Park 904, 1098 XH Amsterdam, The Netherlands.
Jack H Vossen
Wladimir I L Tameling
Marianne J de Vroomen
Ben J C Cornelissen
Frank L W Takken

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant resistance proteins (R) are involved in pathogen recognition and subsequent initiation of defence responses. Their activity is regulated by inter- and intramolecular interactions. In a yeast two-hybrid screen two clones (I2I-1 and I2I-2) specifically interacting with I-2, a Fusarium oxysporum f. sp. lycopersici resistance protein of the CC-NB-LRR family, were identified. Sequence analysis revealed that I2I-1 belongs to the Formin gene family (SlFormin) whereas I2I-2 has homology to translin-associated protein X (SlTrax). SlFormin required only the N-terminal CC I-2 domain for binding, whereas SlTrax required both I-2 CC and part of the NB-ARC domain. Tomato plants stably silenced for these interactors were not compromised in I-2-mediated disease resistance. When extended or mutated forms of I-2 were used as baits, distinct and often opposite, interaction patterns with the two interactors were observed. These interaction patterns correlated with the proposed activation state of I-2 implying that active and inactive R proteins adopt distinct conformations. It is concluded that the yeast two hybrid system can be used as a proxy to monitor these different conformational states.

Indexed as

Protein Interaction MapsBiological AssayDisease ResistanceFusariumGene Expression Regulation, PlantGene SilencingGenes, PlantMutant ProteinsPlant DiseasesPlant ProteinsProtein BindingProtein ConformationProtein Structure, TertiarySolanum lycopersicumTwo-Hybrid System TechniquesMutant ProteinsPlant Proteins

Identifiers

PMID22345637
PMCPMC3350919

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.