Evidence map›Paper›PMID 22345516›Full record

ArticleGenes & development2012

Sumoylation of transcription factor Gcn4 facilitates its Srb10-mediated clearance from promoters in yeast.

Emanuel Rosonina, Sarah M Duncan, James L Manley

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Cyclin-dependent kinases: Masters of the eukaryotic universe.Wiley interdisciplinary reviews. RNA · 2023
    Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. SUMO Chains Rule on Chromatin Occupancy.Frontiers in cell and developmental biology · 2019
    Review
  13. Article
  14. Review
  15. Nup100 regulatesRNA (New York, N.Y.) · 2017
    Article
  16. TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Emanuel RosoninaDepartment of Biological Sciences, Columbia University, New York, New York 10027, USA.
Sarah M Duncan
James L Manley
Columbia University · US

Funding

Transcriptional regulation by protein sumoylationR01GM097174 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI MANLEY, JAMES L. · 2011 to 2014
$990k
NIGMS NIH HHS GM097174NIGMS NIH HHS R01 GM097174
6 · The paper itself

Abstract

The small ubiquitin-related modifier (SUMO) is a conserved factor that post-translationally regulates proteins involved in many cellular processes, including gene transcription. We previously demonstrated that promoter-bound factors become sumoylated during activation of inducible genes in yeast, but the identity of these factors, and the role of sumoylation in their function, was unknown. Here we show that the transcriptional activator Gcn4 is sumoylated on two specific lysine residues and in a manner that depends on its ability to bind DNA, indicating that sumoylation occurs after Gcn4 binding to target promoters. Importantly, this functions to facilitate the subsequent removal of the activator from these promoters after recruitment of RNA polymerase II, which can prevent inappropriate transcription of target genes. Furthermore, we show that clearance of sumoylated Gcn4 requires the protein kinase and Mediator complex subunit Srb10, linking activator removal with target gene transcription. Our study demonstrates an unexpected role for protein sumoylation in the process of transcriptional activation.

Indexed as

Promoter Regions, GeneticArginaseBasic-Leucine Zipper Transcription FactorsChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase 8Cyclin-Dependent KinasesGene Expression Regulation, FungalLysineSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSumoylationARG1 protein, S cerevisiaeArginaseBasic-Leucine Zipper Transcription FactorsChromosomal Proteins, Non-HistoneCyclin-Dependent Kinase 8Cyclin-Dependent KinasesDEF1 protein, S cerevisiaeGCN4 protein, S cerevisiaeLysinePHO85 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSSN3 protein, S cerevisiae

Identifiers

PMID22345516
PMCPMC3289883
OpenAlexW2135326961

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.