Evidence map›Paper›PMID 22345473›Full record

ArticleJournal of virology2012

Efficient Nef-mediated downmodulation of TCR-CD3 and CD28 is associated with high CD4+ T cell counts in viremic HIV-2 infection.

Mohammad Khalid, Hangxing Yu, Daniel Sauter, Shariq M Usmani, Jan Schmokel, Jerome Feldman, Rob A Gruters, Marchina E van der Ende, Matthias Geyer, Sarah Rowland-Jones and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
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  7. Loss of Nef-mediated CD3 down-regulation in the HIV-1 lineage increases viral infectivity and spread.Proceedings of the National Academy of Sciences of the United States of America · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 5 countries.

Mohammad KhalidInstitute of Molecular Virology, University Clinic of Ulm, Ulm, Germany.
Hangxing Yu
Daniel Sauter
Shariq M Usmani
Jan Schmokel
Jerome Feldman
Rob A Gruters
Marchina E van der Ende
Matthias Geyer
Sarah Rowland-Jones
Albert D Osterhaus
Frank Kirchhoff
University Hospital Ulm · DEErasmus MC · NLInstitut Pasteur · FRMax Planck Institute of Molecular Physiology · DEMRC Unit the Gambia · GM

Funding

Medical Research Council MC_U190085854
6 · The paper itself

Abstract

The role of the multifunctional accessory Nef protein in the immunopathogenesis of HIV-2 infection is currently poorly understood. Here, we performed comprehensive functional analyses of 50 nef genes from 21 viremic (plasma viral load, >500 copies/ml) and 16 nonviremic (<500) HIV-2-infected individuals. On average, nef alleles from both groups were equally active in modulating CD4, TCR-CD3, CD28, MHC-I, and Ii cell surface expression and in enhancing virion infectivity. Thus, many HIV-2-infected individuals efficiently control the virus in spite of efficient Nef function. However, the potency of nef alleles in downmodulating TCR-CD3 and CD28 to suppress the activation and apoptosis of T cells correlated with high numbers of CD4(+) T cells in viremic patients. No such correlations were observed in HIV-2-infected individuals with undetectable viral load. Further functional analyses showed that the Nef-mediated downmodulation of TCR-CD3 suppressed the induction of Fas, Fas-L, PD-1, and CTLA-4 cell surface expression as well as the secretion of gamma interferon (IFN-γ) by primary CD4(+) T cells. Moreover, we identified a single naturally occurring amino acid variation (I132T) in the core domain of HIV-2 Nef that selectively disrupts its ability to downmodulate TCR-CD3 and results in functional properties highly reminiscent of HIV-1 Nef proteins. Taken together, our data suggest that the efficient Nef-mediated downmodulation of TCR-CD3 and CD28 help viremic HIV-2-infected individuals to maintain normal CD4(+) T cell homeostasis by preventing T cell activation and by suppressing the induction of death receptors that may affect the functionality and survival of both virally infected and uninfected bystander cells.

Indexed as

CD4 Lymphocyte CountAmino Acid SubstitutionApoptosisCD28 AntigensCell LineDown-RegulationGene ExpressionGene OrderHIV-2HIV InfectionsHumansLeukocytes, MononuclearLymphocyte ActivationModels, MolecularMolecular Sequence Datanef Gene Products, Human Immunodeficiency VirusCD28 Antigensnef Gene Products, Human Immunodeficiency VirusReceptor-CD3 Complex, Antigen, T-CellReceptors, Cell SurfaceReceptors, Death Domain

Identifiers

PMID22345473
PMCPMC3347365
OpenAlexW2098548849

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.