Evidence map›Paper›PMID 22344666›Full record

ArticleApplied and environmental microbiology2012

Identification of Avian pathogenic Escherichia coli genes that are induced in vivo during infection in chickens.

Huruma Nelwike Tuntufye, Sarah Lebeer, Paul Simon Gwakisa, Bruno Maria Goddeeris

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Avian pathogenicVeterinary world · 2024
    Review
  2. Avian PathogenicPathogens (Basel, Switzerland) · 2021
    Review
  3. Article
  4. Function and Regulation of the Pyruvate Transporter CstA inInternational journal of molecular sciences · 2020
    Article
  5. Article
  6. Redox, amino acid, and fatty acid metabolism intersect with bacterial virulence in the gut.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  7. Article
  8. Review
  9. Article
  10. Structure of Escherichia coli RutC, a member of the YjgF family and putative aminoacrylate peracid reductase of the rut operon.Acta crystallographica. Section F, Structural biology and crystallization communications · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Huruma Nelwike TuntufyeDepartment of Biosystems, Faculty of Bioscience Engineering, Katholieke Universiteit Leuven, Leuven, Belgium. Huruma.Tuntufye@biw.kuleuven.be
Sarah Lebeer
Paul Simon Gwakisa
Bruno Maria Goddeeris

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Avian pathogenic Escherichia coli (APEC) is associated with extraintestinal infections in poultry causing a variety of diseases collectively known as colibacillosis. The host and bacterial factors influencing and/or responsible for carriage and systemic translocation of APEC inside the host are poorly understood. Identification of such factors could help in the understanding of its pathogenesis and in the subsequent development of control strategies. Recombination-based in vivo expression technology (RIVET) was used to identify APEC genes specifically expressed during infection in chickens. A total of 21 clones with in vivo-induced promoters were isolated from chicken livers and spleens, indicative of systemic infection. DNA sequencing of the cloned fragments revealed that 12 of the genes were conserved E. coli genes (metH, lysA, pntA, purL, serS, ybjE, ycdK [rutC], wcaJ, gspL, sdsR, ylbE, and yjiY), 6 of the genes were phage related/associated, and 3 genes were pathogen specific (tkt1, irp2, and eitD). These genes are involved in various cellular functions, such as metabolism, cell envelope and integrity, transport systems, and virulence. Others were phage related or have yet-unknown functions.

Indexed as

Gene ExpressionAnimalsBacterial TranslocationChickensDNA, BacterialEscherichia coliEscherichia coli InfectionsGene Expression ProfilingGene Expression Regulation, BacterialLiverMolecular Sequence DataPoultry DiseasesSequence Analysis, DNASpleenVirulence FactorsDNA, BacterialVirulence Factors

Identifiers

PMID22344666
PMCPMC3346453

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.