Evidence map›Paper›PMID 22344656›Full record

ArticleApplied and environmental microbiology2012

Versatile transformation system that is applicable to both multiple transgene expression and gene targeting for Thraustochytrids.

Keishi Sakaguchi, Takanori Matsuda, Takumi Kobayashi, Jun-Ichiro Ohara, Rie Hamaguchi, Eriko Abe, Naoki Nagano, Masahiro Hayashi, Mayumi Ueda, Daiske Honda and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 66 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Characterization of thraustochytrid-specific sterolApplied and environmental microbiology · 2023
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  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Keishi SakaguchiDepartment of Bioscience and Biotechnology, Graduate School of Bioresource and Bioenvironmental Sciences, Kyushu University, Fukuoka, Japan.
Takanori Matsuda
Takumi Kobayashi
Jun-Ichiro Ohara
Rie Hamaguchi
Eriko Abe
Naoki Nagano
Masahiro Hayashi
Mayumi Ueda
Daiske Honda
Yuji Okita
Yousuke Taoka
Shinichi Sugimoto
Nozomu Okino
Makoto Ito
Kyushu University · JPNippon Suisan Kaisha (Japan) · JPKonan University · JPUniversity of Miyazaki · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A versatile transformation system for thraustochytrids, a promising producer for polyunsaturated fatty acids and fatty acid-derived fuels, was established. G418, hygromycin B, blasticidin, and zeocin inhibited the growth of thraustochytrids, indicating that multiple selectable marker genes could be used in the transformation system. A neomycin resistance gene (neo(r)), driven with an ubiquitin or an EF-1α promoter-terminator from Thraustochytrium aureum ATCC 34304, was introduced into representatives of two thraustochytrid genera, Aurantiochytrium and Thraustochytrium. The neo(r) marker was integrated into the chromosomal DNA by random recombination and then functionally translated into neo(r) mRNA. Additionally, we confirmed that another two genera, Parietichytrium and Schizochytrium, could be transformed by the same method. By this method, the enhanced green fluorescent protein was functionally expressed in thraustochytrids. Meanwhile, T. aureum ATCC 34304 could be transformed by two 18S ribosomal DNA-targeting vectors, designed to cause single- or double-crossover homologous recombination. Finally, the fatty acid Δ5 desaturase gene was disrupted by double-crossover homologous recombination in T. aureum ATCC 34304, resulting in an increase of dihomo-γ-linolenic acid (C(20:3n-6)) and eicosatetraenoic acid (C(20:4n-3)), substrates for Δ5 desaturase, and a decrease of arachidonic acid (C(20:4n-6)) and eicosapentaenoic acid (C(20:5n-3)), products for the enzyme. These results clearly indicate that a versatile transformation system which could be applicable to both multiple transgene expression and gene targeting was established for thraustochytrids.

Indexed as

Gene Transfer TechniquesAnti-Infective AgentsFatty Acid DesaturasesGene DeletionGene ExpressionGenes, ReporterGene TargetingGenetics, MicrobialGreen Fluorescent ProteinsRecombination, GeneticRNA, Ribosomal, 18SSelection, GeneticStramenopilesTransformation, GeneticAnti-Infective AgentsFatty Acid DesaturasesGreen Fluorescent ProteinsRNA, Ribosomal, 18S

Identifiers

PMID22344656
PMCPMC3346472
OpenAlexW1983290441

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.