Evidence map›Paper›PMID 22343733›Full record

ArticleLeukemia2012

Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor binding.

A Ptasinska, S A Assi, D Mannari, S R James, D Williamson, J Dunne, M Hoogenkamp, M Wu, M Care, H McNeill and 9 more

Open access · hybridAbstract read
In one paragraph

Article in Leukemia, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
9.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 177 citations in OpenAlex.

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  6. International journal of molecular sciences · 2026
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58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 3 countries.

A PtasinskaSection of Experimental Haematology, Leeds Institute of Molecular Medicine, University of Leeds, Leeds, UK.
S A Assi
D Mannari
S R James
D Williamson
J Dunne
M Hoogenkamp
M Wu
M Care
H McNeill
P Cauchy
M Cullen
R M Tooze
D G Tenen
B D Young
P N Cockerill
D R Westhead
O Heidenreich
C Bonifer
University of Leeds · GBQueen Mary University of London · GBNewcastle University · GBUniversity of Birmingham · GBInstitute of Cancer Research · GBNational University Cancer Institute, Singapore · SGNational University of Singapore · SG

Funding

Distinct acute myeloid leukemia subclasses with CEBPA mutationsR01CA118316 · NCI · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TENEN, DANIEL G · 2007 to 2011
$2.0M
Medical Research Council G0901579NCI NIH HHS R01 CA118316
6 · The paper itself

Abstract

The t(8;21) translocation fuses the DNA-binding domain of the hematopoietic master regulator RUNX1 to the ETO protein. The resultant RUNX1/ETO fusion protein is a leukemia-initiating transcription factor that interferes with RUNX1 function. The result of this interference is a block in differentiation and, finally, the development of acute myeloid leukemia (AML). To obtain insights into RUNX1/ETO-dependant alterations of the epigenetic landscape, we measured genome-wide RUNX1- and RUNX1/ETO-bound regions in t(8;21) cells and assessed to what extent the effects of RUNX1/ETO on the epigenome depend on its continued expression in established leukemic cells. To this end, we determined dynamic alterations of histone acetylation, RNA Polymerase II binding and RUNX1 occupancy in the presence or absence of RUNX1/ETO using a knockdown approach. Combined global assessments of chromatin accessibility and kinetic gene expression data show that RUNX1/ETO controls the expression of important regulators of hematopoietic differentiation and self-renewal. We show that selective removal of RUNX1/ETO leads to a widespread reversal of epigenetic reprogramming and a genome-wide redistribution of RUNX1 binding, resulting in the inhibition of leukemic proliferation and self-renewal, and the induction of differentiation. This demonstrates that RUNX1/ETO represents a pivotal therapeutic target in AML.

Indexed as

Translocation, GeneticAcetylationBinding SitesCCAAT-Binding FactorCell DifferentiationCell Line, TumorChromatinChromosomes, Human, Pair 21Chromosomes, Human, Pair 8Cluster AnalysisCore Binding Factor Alpha 2 SubunitGene Expression ProfilingGene SilencingHistonesHumansLeukemia, Myeloid, AcuteCCAAT-Binding FactorChromatinCore Binding Factor Alpha 2 SubunitHistonesOncogene Proteins, FusionProto-Oncogene ProteinsRNA Polymerase IIRUNX1T1 protein, humanRUNX1 Translocation Partner 1 ProteinTranscription Factors

Identifiers

PMID22343733
PMCPMC3419980
OpenAlexW1981072394

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.