Evidence map›Paper›PMID 22343302›Full record

ArticleJournal of bacteriology2012

RNase III controls the degradation of corA mRNA in Escherichia coli.

Boram Lim, Se-Hoon Sim, Minji Sim, Kyungsub Kim, Che Ok Jeon, Younghoon Lee, Nam-Chul Ha, Kangseok Lee

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Regulation of mRNA decay inCritical reviews in biochemistry and molecular biology · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Regulation of Escherichia coli RNase III activity.Journal of microbiology (Seoul, Korea) · 2015
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Boram LimSchool of Biological Sciences, Chung-Ang University, Seoul, Republic of Korea.
Se-Hoon Sim
Minji Sim
Kyungsub Kim
Che Ok Jeon
Younghoon Lee
Nam-Chul Ha
Kangseok Lee
Chung-Ang University · KRKorea Advanced Institute of Science and Technology · KRPusan National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In Escherichia coli, the corA gene encodes a transporter that mediates the influx of Co(2+), Mg(2+), and Ni(2+) into the cell. During the course of experiments aimed at identifying RNase III-dependent genes in E. coli, we observed that steady-state levels of corA mRNA as well as the degree of cobalt influx into the cell were dependent on cellular concentrations of RNase III. In addition, changes in corA expression levels by different cellular concentrations of RNase III were closely correlated with degrees of resistance of E. coli cells to Co(2+) and Ni(2+). In vitro and in vivo cleavage analyses of corA mRNA identified RNase III cleavage sites in the 5'-untranslated region of the corA mRNA. The introduction of nucleotide substitutions at the identified RNase III cleavage sites abolished RNase III cleavage activity on corA mRNA and resulted in prolonged half-lives of the mRNA, which demonstrates that RNase III cleavage constitutes a rate-determining step for corA mRNA degradation. These findings reveal an RNase III-mediated regulatory pathway that functions to modulate corA expression and, in turn, the influx of metal ions transported by CorA in E. coli.

Indexed as

Base SequenceBiological TransportCation Transport ProteinsCobaltEscherichia coliEscherichia coli ProteinsGene Expression Regulation, BacterialMagnesiumMutationNickelRibonuclease IIIRNA, MessengerRNA StabilityCation Transport ProteinsCobaltCorA protein, E coliEscherichia coli ProteinsMagnesiumNickelRibonuclease IIIRNA, Messenger

Identifiers

PMID22343302
PMCPMC3347049
OpenAlexW2104741129

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.