Evidence map›Paper›PMID 22342544›Full record

ArticleDevelopmental cell2012

Dorsal-ventral gene expression in the Drosophila embryo reflects the dynamics and precision of the dorsal nuclear gradient.

Gregory T Reeves, Nathanie Trisnadi, Thai V Truong, Marcos Nahmad, Sophie Katz, Angelike Stathopoulos

Abstract read
In one paragraph

Article in Developmental cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Identification of optimal fluorophores for use in theMolecular biology of the cell · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Mechanisms for controlling Dorsal nuclear levels.Frontiers in cell and developmental biology · 2024
    Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Temporal integration of inductive cues on the way to gastrulation.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Gregory T ReevesDivision of Biology, California Institute of Technology, Pasadena, CA 91125, USA.
Nathanie Trisnadi
Thai V Truong
Marcos Nahmad
Sophie Katz
Angelike Stathopoulos

Funding

Center for in Toto Genomic Analysis of Vertebrate DevelopmentP50HG004071 · NHGRI · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI FRASER, SCOTT E · 2006 to 2011
$18.4M
Patterning of Drosphila Embryos by the Dorsal-dependent Gene NetworkR01GM077668 · NIGMS · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI STATHOPOULOS, ANGELIKE · 2007 to 2016
$3.0M
NHGRI NIH HHS P50 HG004071NHGRI NIH HHS P50HG004071NIGMS NIH HHS R01 GM077668
6 · The paper itself

Abstract

Patterning of the dorsal-ventral axis in the early Drosophila embryo depends on the nuclear distribution of the Dorsal transcription factor. Using live two-photon light-sheet microscopy, we quantified the nuclear Dorsal gradient in space and time and found that its amplitude and basal levels display oscillations throughout early embryonic development. These dynamics raise questions regarding how cells can reproducibly establish patterns of gene expression from a rapidly varying signal. We therefore quantified domains of Dorsal target genes, discovering their expression patterns are also dynamic. Computational modeling of this system reveals a correlation between Dorsal gradient dynamics and changes in target gene expression and suggests that these dynamics, together with time averaging of noise, results in the formation of graded gene expression borders in regions where the gradient is nearly flat. We propose that mRNA levels remain plastic during transient signaling events, allowing tissues to refine patterns in the face of genetic or environmental variation.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBody PatterningComputer SimulationDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianFemaleMicroscopyTranscription FactorsDrosophila ProteinsTranscription Factors

Identifiers

PMID22342544
PMCPMC3469262

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.