Evidence map›Paper›PMID 22341448›Full record

ArticleCell2012

Genome sequencing and analysis of the Tasmanian devil and its transmissible cancer.

Elizabeth P Murchison, Ole B Schulz-Trieglaff, Zemin Ning, Ludmil B Alexandrov, Markus J Bauer, Beiyuan Fu, Matthew Hims, Zhihao Ding, Sergii Ivakhno, Caitlin Stewart and 46 more

Open access · hybridAbstract read
In one paragraph

Article in Cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 172 papers.

0numbers the graph read from it
0cells of the map it votes in
172citing papers in PubMed
23.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

172 citing papers in PubMed, 342 citations in OpenAlex.

  1. Article
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  4. Harmonized nonhuman cancer database.bioRxiv : the preprint server for biology · 2025
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  10. Review
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  12. Intergenomic signatures of coevolution between Tasmanian devils and an infectious cancer.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. GigaByte (Hong Kong, China) · 2024
    Article
  14. Article
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112 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

56 authors at 8 institutions in 3 countries.

Elizabeth P MurchisonWellcome Trust Sanger Institute, Hinxton, CB10 1SA, UK. elizabeth.murchison@sanger.ac.uk
Ole B Schulz-Trieglaff
Zemin Ning
Ludmil B Alexandrov
Markus J Bauer
Beiyuan Fu
Matthew Hims
Zhihao Ding
Sergii Ivakhno
Caitlin Stewart
Bee Ling Ng
Wendy Wong
Bronwen Aken
Simon White
Amber Alsop
Jennifer Becq
Graham R Bignell
R Keira Cheetham
William Cheng
Thomas R Connor
Anthony J Cox
Zhi-Ping Feng
Yong Gu
Russell J Grocock
Simon R Harris
Irina Khrebtukova
Zoya Kingsbury
Mark Kowarsky
Alexandre Kreiss
Shujun Luo
John Marshall
David J McBride
Lisa Murray
Anne-Maree Pearse
Keiran Raine
Isabelle Rasolonjatovo
Richard Shaw
Philip Tedder
Carolyn Tregidgo
Albert J Vilella
David C Wedge
Gregory M Woods
Niall Gormley
Sean Humphray
Gary Schroth
Geoffrey Smith
Kevin Hall
Stephen M J Searle
Nigel P Carter
Anthony T Papenfuss
P Andrew Futreal
Peter J Campbell
Fengtang Yang
David R Bentley
Dirk J Evers
Michael R Stratton
Wellcome Sanger Institute · GBIllumina (United Kingdom) · GBIllumina (United States) · USUniversity of Tasmania · AUWalter and Eliza Hall Institute of Medical Research · AUAustralian National University · AUUniversity of Melbourne · AUWellcome Trust · GB

Funding

Wellcome Trust 077012/Z/05/ZWellcome Trust 088340Wellcome Trust 095908
6 · The paper itself

Abstract

The Tasmanian devil (Sarcophilus harrisii), the largest marsupial carnivore, is endangered due to a transmissible facial cancer spread by direct transfer of living cancer cells through biting. Here we describe the sequencing, assembly, and annotation of the Tasmanian devil genome and whole-genome sequences for two geographically distant subclones of the cancer. Genomic analysis suggests that the cancer first arose from a female Tasmanian devil and that the clone has subsequently genetically diverged during its spread across Tasmania. The devil cancer genome contains more than 17,000 somatic base substitution mutations and bears the imprint of a distinct mutational process. Genotyping of somatic mutations in 104 geographically and temporally distributed Tasmanian devil tumors reveals the pattern of evolution and spread of this parasitic clonal lineage, with evidence of a selective sweep in one geographical area and persistence of parallel lineages in other populations.

Indexed as

Genomic InstabilityMutationAnimalsClonal EvolutionEndangered SpeciesFacial NeoplasmsFemaleGenome-Wide Association StudyMaleMarsupialiaMolecular Sequence DataTasmania

Identifiers

PMID22341448
PMCPMC3281993
OpenAlexW2149771342

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.