Evidence map›Paper›PMID 22336945›Full record

ArticleThe Journal of investigative dermatology2012

A community-based study of nucleotide excision repair polymorphisms in relation to the risk of non-melanoma skin cancer.

Lee Wheless, Emily Kistner-Griffin, Timothy J Jorgensen, Ingo Ruczinski, Yvette Berthier-Schaad, Bailey Kessing, Judith Hoffman-Bolton, Lesley Francis, Yin Yao Shugart, Paul T Strickland and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of investigative dermatology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 35 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. DNA repair variants, indoor tanning, and risk of melanoma.Pigment cell & melanoma research · 2013
    Article
  10. Comprehensive assessment of the association of ERCC2 Lys751Gln polymorphism with susceptibility to cutaneous melanoma.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 1 country.

Lee WhelessDepartment of Medicine, Division of Epidemiology and Biostatistics, Medical University of South Carolina, Charleston, South Carolina 29425, USA.
Emily Kistner-Griffin
Timothy J Jorgensen
Ingo Ruczinski
Yvette Berthier-Schaad
Bailey Kessing
Judith Hoffman-Bolton
Lesley Francis
Yin Yao Shugart
Paul T Strickland
W H Linda Kao
Rhoda M Alani
Michael W Smith
Anthony J Alberg
Johns Hopkins University · USFrederick National Laboratory for Cancer Research · USMedical University of South Carolina · USBoston University · USGeorgetown University · USMUSC Hollings Cancer Center · USNational Institute of Mental Health · USScience Applications International Corporation (United States) · US

Funding

Translational Science Laboratory Shared ResourceP30CA138313 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI RAYMOND N. DUBOIS · 2009 to 2026
$42.7M
SOUTH CAROLINA CLINICAL & TRANSLATIONAL RESEARCH INSTITUTE (SCTR)UL1RR029882 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2009 to 2011
$10.1M
Developing new statisical methods to detect variants involved in complex diseaseZIAMH002929 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI YAO, YIN · 2011 to 2016
$2.6M
DNA Repair, Skin Cancer and Overall Cancer RiskR01CA105069 · NCI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ALBERG, ANTHONY J · 2005 to 2009
$2.4M
Developing Stats Methods to Detect Rare Genetics Variants in Human PedigreesZIAMH002930 · NIMH · NATIONAL INSTITUTE OF MENTAL HEALTH · PI YAO, YIN · 2011 to 2016
$1.6M
South Carolina Clinical & Translational Research Institute (SCTR)TL1RR029881 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2009 to 2011
$1.1M
NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NCI NIH HHS P30 CA138313NCI NIH HHS R01 CA105069NCRR NIH HHS TL1 RR029881NCRR NIH HHS UL1 RR029882
6 · The paper itself

Abstract

Nucleotide excision repair (NER) is responsible for protecting DNA in skin cells against UVR-induced damage. Using a candidate pathway approach, a matched case-control study nested within a prospective, community-based cohort was carried out to test the hypothesis that single-nucleotide polymorphisms (SNPs) in NER genes are associated with susceptibility to non-melanoma skin cancer (NMSC). Histologically confirmed cases of NMSC (n=900) were matched to controls (n=900) on the basis of age, gender, and skin type. Associations were measured between NMSC and 221 SNPs in 26 NER genes. Using the additive model, two tightly linked functional SNPs in ERCC6 were significantly associated with increased risk of NMSC: rs2228527 (odds ratio (OR) 1.57, 95% confidence interval (CI) 1.20-2.05) and rs2228529 (OR 1.57, 95% CI 1.20-2.05). These associations were confined to basal cell carcinoma (BCC) of the skin (rs2228529, OR 1.78, 95% CI 1.30-2.44; rs2228527, OR 1.78, 95% CI 1.31-2.43). These hypothesis-generating findings suggest that functional variants in ERCC6 may be associated with an increased risk of NMSC that may be specific to BCC.

Indexed as

DNA RepairPolymorphism, Single NucleotideAdultAgedBasal Cell CarcinomaCarcinoma, Squamous CellCase-Control StudiesConfidence IntervalsDNA HelicasesDNA Repair EnzymesFemaleHumansMaleMiddle AgedOdds RatioPoly-ADP-Ribose Binding ProteinsDNA HelicasesDNA Repair EnzymesERCC6 protein, humanPoly-ADP-Ribose Binding Proteins

Identifiers

PMID22336945
PMCPMC3326207
OpenAlexW1997752485

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.