Evidence map›Paper›PMID 22336717›Full record

ArticleRNA biology2012

Pathogenesis-related mutations in the T-loops of human mitochondrial tRNAs affect 3' end processing and tRNA structure.

Louis Levinger, Dmitri Serjanov

Open access · bronzeAbstract read
In one paragraph

Article in RNA biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Contribution of the tRNAThe Journal of biological chemistry · 2018
    Article
  9. Review
  10. Mitochondrial transcript maturation and its disorders.Journal of inherited metabolic disease · 2015
    Review
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Louis LevingerYork College of The City University of New York, Jamaica, NY, USA. llevinger@york.cuny.edu
Dmitri Serjanov
York College, City University of New York · US

Funding

UNIQUELY LABELED AMINO ACIDS FOR PROTEIN NMRS06GM008153 · NIGMS · YORK COLLEGE · PI JOHNSON, LAWRENCE WILLIAM · 1989 to 2008
$13.8M
Regulation of Substrate Binding and Catalysis in tRNase ZR15CA120072 · NCI · YORK COLLEGE · PI LEVINGER, LOUIS F · 2006 to 2010
$597k
NCI NIH HHS R15 CA120072NCI NIH HHS R15CA120072NIGMS NIH HHS S06 GM008153NIGMS NIH HHS SC3GM08153
6 · The paper itself

Abstract

Numerous mutations in the mitochondrial genome are associated with maternally transmitted diseases and syndromes that affect muscle and other high energy-demand tissues. The mitochondrial genome encodes 13 polypeptides, 2 rRNAs and 22 interspersed tRNAs via long bidirectional polycistronic primary transcripts, requiring precise excision of the tRNAs. Despite making up only ~10% of the mitochondrial genome, tRNA genes harbor most of the pathogenesis-related mutations. tRNase Z endonucleolytically removes the pre-tRNA 3' trailer. The flexible arm of tRNase Z recognizes and binds the elbow (including the T-loop) of pre-tRNA. Pathogenesis-related T-loop mutations in mitochondrial tRNAs could thus affect tRNA structure, reduce tRNase Z binding and 3' processing, and consequently slow mitochondrial protein synthesis. Here we inspect the effects of pathogenesis-related mutations in the T-loops of mitochondrial tRNAs on pre-tRNA structure and tRNase Z processing. Increases in K(M) arising from 59A > G substitutions in mitochondrial tRNA(Gly) and tRNA(Ile) accompany changes in T-loop structure, suggesting impaired substrate binding to enzyme.

Indexed as

MutationNucleic Acid ConformationRNA 3' End ProcessingBase SequenceEndoribonucleasesHumansModels, MolecularMolecular Sequence DataRNARNA, MitochondrialRNA PrecursorsRNA, TransferEndoribonucleasesRNARNA, MitochondrialRNA PrecursorsRNA, Transfer

Identifiers

PMID22336717
PMCPMC3384583
OpenAlexW2044986340

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.