Evidence map›Paper›PMID 22336707›Full record

ArticleRNA biology2012

Tri-snRNP-associated proteins interact with subunits of the TRAMP and nuclear exosome complexes, linking RNA decay and pre-mRNA splicing.

Anita Nag, Joan A Steitz

Open access · hybridAbstract read
In one paragraph

Article in RNA biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 40 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Alternative RNA Splicing in Fatty Liver Disease.Frontiers in endocrinology · 2021
    Review
  5. Review
  6. The multitasking polyA tail: nuclear RNA maturation, degradation and export.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  7. Terminal nucleotidyl transferases (TENTs) in mammalian RNA metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. The regulation and functions of the nuclear RNA exosome complex.Nature reviews. Molecular cell biology · 2016
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Anita NagDepartment of Molecular Biophysics and Biochemistry-MB&B, Howard Hughes Medical Institute-HHMI, Yale University School of Medicine, Boyer Center for Molecular Medicine, New Haven, CT, USA.
Joan A Steitz
Howard Hughes Medical Institute · USYale University · US

Funding

Vertebrate Non-Coding RNPs: Integrating function, biogenesis and survivalR01GM026154 · NIGMS · YALE UNIVERSITY · PI STEITZ, JOAN A. · 1985 to 2014
$4.0M
AUTOANTIBODY PROBES FOR MAMMALIAN GENE EXPRESSIONR37GM026154 · NIGMS · YALE UNIVERSITY · PI STEITZ, JOAN A. · 1989 to 1998
–
Howard Hughes Medical InstituteNIGMS NIH HHS GM026154NIGMS NIH HHS R01 GM026154
6 · The paper itself

Abstract

Nuclear RNA decay factors are involved in many different pathways including rRNA processing, snRNA and snoRNA biogenesis, pre-mRNA processing, and the rapid decay of cryptic intergenic transcripts. In contrast to its yeast counterpart, the mammalian nuclear decay machinery is largely uncharacterized. Here we report interactions of several putative components of the human nuclear RNA decay machinery, including the TRAMP complex protein Mtr4 and the nuclear exosome constituents PM/Scl-100 and PM/Scl-75, with components of the U4/U6.U5 tri-snRNP complex required for pre-mRNA splicing. The tri-snRNP component Prp31 interacts indirectly with Mtr4 and PM/Scl-100 in a manner that is dependent on the phosphorylation sites in the middle of the protein, while Prp3 and Prp4 interact with the nuclear decay complex independent of Prp31. Together our results suggest recruitment of the nuclear decay machinery to the spliceosome to ensure production of properly spliced mRNA.

Indexed as

RNA SplicingRNA StabilityCell LineChromosomal Proteins, Non-HistoneDNA-Directed DNA PolymeraseExosomesEye ProteinsHumansMultiprotein ComplexesPhosphorylationPolyadenylationProtein BindingProtein SubunitsRNA HelicasesRNA PrecursorsChromosomal Proteins, Non-HistoneDNA-Directed DNA PolymeraseEye ProteinsMTREX protein, humanMultiprotein ComplexesProtein SubunitsPRPF31 protein, humanRNA HelicasesRNA PrecursorsTENT4A protein, human

Identifiers

PMID22336707
PMCPMC3384585
OpenAlexW1969456766

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.