ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2012
Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum).
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
What it found
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Who cites it
18 citing papers in PubMed, 54 citations in OpenAlex.
- Genome-wide association mapping for stay-green and stem reserve mobilization traits in wheat (Triticum aestivum L.) under combined heat and drought stress.Protoplasma · 2025Article
- Deciphering drought-response in wheat (Frontiers in plant science · 2025Article
- Morpho-Physiological and Hormonal Response of Winter Wheat Varieties to Drought Stress at Stem Elongation and Anthesis Stages.Plants (Basel, Switzerland) · 2023Article
- Genome-wide association mapping of genomic regions associated with drought stress tolerance at seedling and reproductive stages in bread wheat.Frontiers in plant science · 2023Article
- Characteristics and Regulating Roles of Wheat TaHsfA2-13 in Abiotic Stresses.Frontiers in plant science · 2022Article
- Editorial: Drought Threat: Responses and Molecular-Genetic Mechanisms of Adaptation and Tolerance in Wheat.Frontiers in plant science · 2022Article
- RNA-Seq-based DNA marker analysis of the genetics and molecular evolution of Triticeae species.Functional & integrative genomics · 2021Review
- Development and Characterization of Near-Isogenic Lines Revealing Candidate Genes for a Major 7AL QTL Responsible for Heat Tolerance in Wheat.Frontiers in plant science · 2020Article
- Development of Drought-Tolerant Transgenic Wheat: Achievements and Limitations.International journal of molecular sciences · 2019Review
- Identification of Wheat Inflorescence Development-Related Genes Using a Comparative Transcriptomics Approach.International journal of genomics · 2018Article
- Drought Response in Wheat: Key Genes and Regulatory Mechanisms Controlling Root System Architecture and Transpiration Efficiency.Frontiers in chemistry · 2017Review
- De Novo Assembled Wheat Transcriptomes Delineate Differentially Expressed Host Genes in Response to Leaf Rust Infection.PloS one · 2016Article
- Transcriptome-wide analysis of WRKY transcription factors in wheat and their leaf rust responsive expression profiling.Molecular genetics and genomics : MGG · 2014Article
- Article
- Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress.Molecular genetics and genomics : MGG · 2014Article
- dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts.Database : the journal of biological databases and curation · 2013Article
- Co-expression and co-responses: within and beyond transcription.Frontiers in plant science · 2012Article
- A hybrid distance measure for clustering expressed sequence tags originating from the same gene family.PloS one · 2012Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors at 4 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
About 1 million expressed sequence tag (EST) sequences comprising 125.3 Mb nucleotides were accreted from 51 cDNA libraries constructed from a variety of tissues and organs under a range of conditions, including abiotic stresses and pathogen challenges in common wheat (Triticum aestivum). Expressed sequence tags were assembled with stringent parameters after processing with inbuild scripts, resulting in 37,138 contigs and 215,199 singlets. In the assembled sequences, 10.6% presented no matches with existing sequences in public databases. Functional characterization of wheat unigenes by gene ontology annotation, mining transcription factors, full-length cDNA, and miRNA targeting sites were carried out. A bioinformatics strategy was developed to discover single-nucleotide polymorphisms (SNPs) within our large EST resource and reported the SNPs between and within (homoeologous) cultivars. Digital gene expression was performed to find the tissue-specific gene expression, and correspondence analysis was executed to identify common and specific gene expression by selecting four biotic stress-related libraries. The assembly and associated information cater a framework for future investigation in functional genomics.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.