Evidence map›Paper›PMID 22331916›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Antigenic diversity is generated by distinct evolutionary mechanisms in African trypanosome species.

Andrew P Jackson, Andrew Berry, Martin Aslett, Harriet C Allison, Peter Burton, Jana Vavrova-Anderson, Robert Brown, Hilary Browne, Nicola Corton, Heidi Hauser and 13 more

Open access · bronzeAbstract readComparative StudyVideo-Audio Media
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
11.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 157 citations in OpenAlex.

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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 5 institutions in 1 country.

Andrew P JacksonWellcome Trust Sanger Institute, Hinxton, Cambridge CB10 1SA, United Kingdom. andrew.jackson@sanger.ac.uk
Andrew Berry
Martin Aslett
Harriet C Allison
Peter Burton
Jana Vavrova-Anderson
Robert Brown
Hilary Browne
Nicola Corton
Heidi Hauser
John Gamble
Ruth Gilderthorp
Lucio Marcello
Jacqueline McQuillan
Thomas D Otto
Michael A Quail
Mandy J Sanders
Andries van Tonder
Michael L Ginger
Mark C Field
J David Barry
Christiane Hertz-Fowler
Matthew Berriman
Wellcome Sanger Institute · GBWellcome Trust · GBLancaster University · GBUniversity of Cambridge · GBUniversity of Glasgow · GB

Funding

Wellcome Trust 085349Wellcome Trust 085349/Z/08/ZWellcome Trust WT 055558/Z/98/AWellcome Trust WT 055558/Z/98/CWellcome Trust WT 085775/Z/08/Z
6 · The paper itself

Abstract

Antigenic variation enables pathogens to avoid the host immune response by continual switching of surface proteins. The protozoan blood parasite Trypanosoma brucei causes human African trypanosomiasis ("sleeping sickness") across sub-Saharan Africa and is a model system for antigenic variation, surviving by periodically replacing a monolayer of variant surface glycoproteins (VSG) that covers its cell surface. We compared the genome of Trypanosoma brucei with two closely related parasites Trypanosoma congolense and Trypanosoma vivax, to reveal how the variant antigen repertoire has evolved and how it might affect contemporary antigenic diversity. We reconstruct VSG diversification showing that Trypanosoma congolense uses variant antigens derived from multiple ancestral VSG lineages, whereas in Trypanosoma brucei VSG have recent origins, and ancestral gene lineages have been repeatedly co-opted to novel functions. These historical differences are reflected in fundamental differences between species in the scale and mechanism of recombination. Using phylogenetic incompatibility as a metric for genetic exchange, we show that the frequency of recombination is comparable between Trypanosoma congolense and Trypanosoma brucei but is much lower in Trypanosoma vivax. Furthermore, in showing that the C-terminal domain of Trypanosoma brucei VSG plays a crucial role in facilitating exchange, we reveal substantial species differences in the mechanism of VSG diversification. Our results demonstrate how past VSG evolution indirectly determines the ability of contemporary parasites to generate novel variant antigens through recombination and suggest that the current model for antigenic variation in Trypanosoma brucei is only one means by which these parasites maintain chronic infections.

Indexed as

Evolution, MolecularGenome, ProtozoanAmino Acid SequenceAnimalsAntigenic VariationBase SequenceDNA, ProtozoanHumansImmune EvasionModels, MolecularMolecular Sequence DataPhylogenyProtein ConformationProtozoan ProteinsRecombination, GeneticSequence AlignmentDNA, ProtozoanProtozoan ProteinsVariant Surface Glycoproteins, Trypanosoma

Identifiers

PMID22331916
PMCPMC3295286
OpenAlexW2156429640

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.