Evidence map›Paper›PMID 22331649›Full record

ArticleHepatology (Baltimore, Md.)2012

HCV RNA levels in a multiethnic cohort of injection drug users: human genetic, viral and demographic associations.

Lorenzo Uccellini, Fan-Chen Tseng, Alessandro Monaco, Fatma M Shebl, Ruth Pfeiffer, Myhanh Dotrang, Dianna Buckett, Michael P Busch, Ena Wang, Brian R Edlin and 2 more

Registry-linked trialOpen access · bronzeAbstract readComparative Study
In one paragraph

Article in Hepatology (Baltimore, Md.), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00341484 (Genetic Susceptibility to Oncogenic Viruses), which is not on this map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00341484 completednot on this map

Genetic Susceptibility to Oncogenic Viruses

TypeobservationalSponsorNational Cancer Institute (NCI)Ran1998 to 2007Enrolled2,580ConditionsLiver Neoplasms, HIV Infections
3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. The IFN-λ4 Conundrum: When a Good Interferon Goes Bad.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2019
    Review
  4. Article
  5. Article
  6. Article
  7. Influence of IFNL3 and HLA-DPB1 genotype on postpartum control of hepatitis C virus replication and T-cell recovery.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  8. Article
  9. Expression of Interferon Lambda 4 Is Associated with Reduced Proliferation and Increased Cell Death in Human Hepatic Cells.Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research · 2015
    Article
  10. Article
  11. Article
  12. Interferon lambda 3 genotype predicts hepatitis C virus RNA levels in early acute infection among people who inject drugs: the InC(3) study.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2014
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Association of genotypes with viral load and biochemical markers in HCV-infected Sindhi patients.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 2 countries.

Lorenzo UccelliniInfectious Disease and Immunogenetics Section, Department of Transfusion Medicine, Clinical Center and Trans-NIH Center for Human Immunology, National Institutes of Health, Bethesda, MD 20892, USA.
Fan-Chen Tseng
Alessandro Monaco
Fatma M Shebl
Ruth Pfeiffer
Myhanh Dotrang
Dianna Buckett
Michael P Busch
Ena Wang
Brian R Edlin
Francesco M Marincola
Thomas R O'Brien
National Cancer Institute · USNational Institutes of Health · USDivision of Cancer Epidemiology and GeneticsNational Institutes of Health Clinical Center · USSUNY Downstate Health Sciences University · USUniversity of California, San Francisco · US

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Epidemiology and Natural History of Cancer-Associated VirusesZIACP010176 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI MBULAITEYE, SAM M · 2009 to 2025
$33.7M
Epidemiology of Oncogenic VirusesZIACP005782 · NCI · DIVISION OF CANCER EPIDEMIOLOGY AND GENETICS · PI O'BRIEN, THOMAS R · 2009 to 2025
$6.7M
Acute HCV Infection in Injection Drug UsersR01DA016159 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI EDLIN, BRIAN R. · 2004 to 2008
$3.5M
SYRINGE EXCHANGE PEER MOBILIZATION INTERVENTIONR01DA009532 · NIDA · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI EDLIN, BRIAN R. · 1995 to 2004
$3.0M
CLINICAL AND HISTOLOGIC SPECTRUM OF HCV LIVER DISEASE INR01DA013245 · NIDA · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI EDLIN, BRIAN R. · 1999 to 2001
$646k
HIV PREVALENCE AND INCIDENCE TRENDS AMONG IDUS 1986-1997R01DA012109 · NIDA · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI KRAL, ALEXANDER H · 1998 to 2000
$259k
Immunogenetic Study of Infectious Diseases and CancerZIACL002118 · CLC · CLINICAL CENTER · PI MARINCOLA, FRANCESCO M · 2009 to 2012
$0k
Intramural NIH HHS ZIA CP010176NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400NCI NIH HHS N02-CP-91027NIAID NIH HHS P30 AI027763NIDA NIH HHS R01 DA009532NIDA NIH HHS R01 DA012109NIDA NIH HHS R01 DA013245NIDA NIH HHS R01 DA016159NIDA NIH HHS R01-DA09532NIDA NIH HHS R01-DA13245NIDA NIH HHS R01-DA16159
6 · The paper itself

Abstract

unlabelledIn patients with chronic hepatitis C, the hepatitis C virus (HCV) RNA level is an important predictor of treatment response. To explore the relationship of HCV RNA with viral and demographic factors, as well as IL28B genotype, we examined viral levels in an ethnically diverse group of injection drug users (IDUs). Between 1998 and 2000, the Urban Health Study (UHS) recruited IDUs from street settings in San Francisco Bay area neighborhoods. Participants who were positive by HCV enzyme immunoassay were tested for HCV viremia by a branched-chain DNA assay. HCV genotype was determined by sequencing the HCV nonstructural 5B protein region. For a subset of participants, IL28B rs12979860 genotype was determined by Taqman. Among 1,701 participants with HCV viremia, median age was 46 years and median duration of injection drug use was 26 years; 56.0% were African American and 34.0% were of European ancestry (non-Hispanic). Human immunodeficiency virus type 1 (HIV-1) prevalence was 13.9%. The overall median HCV RNA level was 6.45 log(10) copies/mL. In unadjusted analyses, higher levels were found with older age, male gender, African-American ancestry, hepatitis B virus infection, HIV-1 infection, and IL28B rs12979860-CC genotype; compared to participants infected with HCV genotype 1, HCV RNA was lower in participants with genotypes 3 or 4. In an adjusted analysis, age, gender, racial ancestry, HIV-1 infection, HCV genotype, and IL28B rs12979860 genotype were all independently associated with HCV RNA.

conclusionThe level of HCV viremia is influenced by a large number of demographic, viral, and human genetic factors.

Indexed as

AdultAge FactorsCohort StudiesFemaleGenotypeHepacivirusHepatitis C, ChronicHIV InfectionsHumansInterferon LambdaInterferonsInterleukinsMaleMiddle AgedMultivariate AnalysisPolymerase Chain ReactionInterferon Lambdainterferon-lambda, humanInterferonsInterleukinsRNA, Viral

Identifiers

PMID22331649
PMCPMC3369001
OpenAlexW1974350549

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.