Evidence map›Paper›PMID 22331411›Full record

ArticlePlant physiology2012

Natural hypolignification is associated with extensive oligolignol accumulation in flax stems.

Rudy Huis, Kris Morreel, Ophélie Fliniaux, Anca Lucau-Danila, Stéphane Fénart, Sébastien Grec, Godfrey Neutelings, Brigitte Chabbert, François Mesnard, Wout Boerjan and 1 more

Abstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Metabolite Profiling of Paraquat TolerantAntioxidants (Basel, Switzerland) · 2022
    Article
  6. International journal of molecular sciences · 2022
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. International journal of molecular sciences · 2020
    Article
  15. Review
  16. Article
  17. Oxidative Transformations of Lignans.Molecules (Basel, Switzerland) · 2019
    Review
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Rudy HuisUniversité Lille Nord de France, Lille 1 UMR 1281, F-59650 Villeneuve d'Ascq cedex, France.
Kris Morreel
Ophélie Fliniaux
Anca Lucau-Danila
Stéphane Fénart
Sébastien Grec
Godfrey Neutelings
Brigitte Chabbert
François Mesnard
Wout Boerjan
Simon Hawkins

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flax (Linum usitatissimum) stems contain cells showing contrasting cell wall structure: lignified in inner stem xylem tissue and hypolignified in outer stem bast fibers. We hypothesized that stem hypolignification should be associated with extensive phenolic accumulation and used metabolomics and transcriptomics to characterize these two tissues. (1)H nuclear magnetic resonance clearly distinguished inner and outer stem tissues and identified different primary and secondary metabolites, including coniferin and p-coumaryl alcohol glucoside. Ultrahigh-performance liquid chromatography-Fourier transform ion cyclotron resonance-mass spectrometry aromatic profiling (lignomics) identified 81 phenolic compounds, of which 65 were identified, to our knowledge, for the first time in flax and 11 for the first time in higher plants. Both aglycone forms and glycosides of monolignols, lignin oligomers, and (neo)lignans were identified in both inner and outer stem tissues, with a preponderance of glycosides in the hypolignified outer stem, indicating the existence of a complex monolignol metabolism. The presence of coniferin-containing secondary metabolites suggested that coniferyl alcohol, in addition to being used in lignin and (neo)lignan formation, was also utilized in a third, partially uncharacterized metabolic pathway. Hypolignification of bast fibers in outer stem tissues was correlated with the low transcript abundance of monolignol biosynthetic genes, laccase genes, and certain peroxidase genes, suggesting that flax hypolignification is transcriptionally regulated. Transcripts of the key lignan genes Pinoresinol-Lariciresinol Reductase and Phenylcoumaran Benzylic Ether Reductase were also highly abundant in flax inner stem tissues. Expression profiling allowed the identification of NAC (NAM, ATAF1/2, CUC2) and MYB transcription factors that are likely involved in regulating both monolignol production and polymerization as well as (neo)lignan production.

Indexed as

Cell WallFlaxGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantLaccaseLignansLigninMagnetic Resonance SpectroscopyMass SpectrometryModels, BiologicalPeroxidasePhenolsPlant StemsPolymerizationSpectroscopy, Fourier Transform InfraredLaccaseLignansLigninPeroxidasePhenolsTranscription Factors

Identifiers

PMID22331411
PMCPMC3320194

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.