Evidence map›Paper›PMID 22328084›Full record

ArticleHuman molecular genetics2012

Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function.

Noboru J Sakabe, Ivy Aneas, Tao Shen, Leila Shokri, Soo-Young Park, Martha L Bulyk, Sylvia M Evans, Marcelo A Nobrega

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 71 citations in OpenAlex.

  1. Trial
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  3. Chromosomal Location and Identification ofDiagnostics (Basel, Switzerland) · 2025
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  4. Role ofCirculation. Genomic and precision medicine · 2024
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  7. Discovery ofBiology · 2023
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  10. Understanding the molecular basis of cardiomyopathy.American journal of physiology. Heart and circulatory physiology · 2022
    Review
  11. The Role ofFrontiers in cell and developmental biology · 2021
    Review
  12. Article
  13. Review
  14. A Soybean bZIP Transcription FactorInternational journal of molecular sciences · 2020
    Article
  15. Article
  16. Journal of biological research (Thessalonike, Greece) · 2019
    Article
  17. Article
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  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Noboru J SakabeDepartment of Human Genetics, University of Chicago, Chicago, IL 60637, USA. nsakabe@uchicago.edu
Ivy Aneas
Tao Shen
Leila Shokri
Soo-Young Park
Martha L Bulyk
Sylvia M Evans
Marcelo A Nobrega
University of Chicago · USBrigham and Women's Hospital · USUniversity of California, San Diego · US

Funding

Universal, Compact Combinatorial Microarrays for DNA Binding Site DiscoveryR01HG003985 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI BULYK, MARTHA L · 2006 to 2017
$4.9M
Generation and in vivo validation of cis-regulatory maps in eukaryotic genomesR01HG004428 · NHGRI · UNIVERSITY OF CHICAGO · PI NOBREGA, MARCELO A. · 2007 to 2009
$1.5M
Dissecting of the Tbx20 Regulatory NetworkR01HL088393 · NHLBI · UNIVERSITY OF CHICAGO · PI NOBREGA, MARCELO A. · 2009 to 2010
$844k
In vivo reagents to identify functional noncoding sequences in the TCF7L2 locusR21DK078871 · NIDDK · UNIVERSITY OF CHICAGO · PI NOBREGA, MARCELO A. · 2007 to 2008
$417k
Genomic Analysis of Cis Regulatory Networks of Drosophila Muscle DevelopmentF32GM090645 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI SHOKRI, LEILA · 2010 to 2011
$107k
NHGRI NIH HHS HG003985NHGRI NIH HHS HG004428NHGRI NIH HHS R01 HG004428NHLBI NIH HHS HL088393NHLBI NIH HHS R01 HL088393NIDDK NIH HHS DK078871NIGMS NIH HHS GM090645
6 · The paper itself

Abstract

The ongoing requirement in adult heart for transcription factors with key roles in cardiac development is not well understood. We recently demonstrated that TBX20, a transcriptional regulator required for cardiac development, has key roles in the maintenance of functional and structural phenotypes in adult mouse heart. Conditional ablation of Tbx20 in adult cardiomyocytes leads to a rapid onset and progression of heart failure, with prominent conduction and contractility phenotypes that lead to death. Here we describe a more comprehensive molecular characterization of the functions of TBX20 in adult mouse heart. Coupling genome-wide chromatin immunoprecipitation and transcriptome analyses (RNA-Seq), we identified a subset of genes that change expression in Tbx20 adult cardiomyocyte-specific knockout hearts which are direct downstream targets of TBX20. This analysis revealed a dual role for TBX20 as both a transcriptional activator and a repressor, and that each of these functions regulates genes with very specialized and distinct molecular roles. We also show how TBX20 binds to its targets genome-wide in a context-dependent manner, using various cohorts of co-factors to either promote or repress distinct genetic programs within adult heart. Our integrative approach has uncovered several novel aspects of TBX20 and T-box protein function within adult heart. Sequencing data accession number (http://www.ncbi.nlm.nih.gov/geo): GSE30943.

Indexed as

AnimalsCardiomyopathiesChromatin ImmunoprecipitationGene Expression ProfilingGene Expression RegulationMiceMice, KnockoutMyocardial ContractionMyocardiumMyocytes, CardiacT-Box Domain ProteinsTranscription FactorsT-Box Domain ProteinsTbx20 protein, mouseTranscription Factors

Identifiers

PMID22328084
PMCPMC3335310
OpenAlexW2166283098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.