Evidence map›Paper›PMID 22327593›Full record

ArticleApplied and environmental microbiology2012

Presence and functionality of mating type genes in the supposedly asexual filamentous fungus Aspergillus oryzae.

Ryuta Wada, Jun-Ichi Maruyama, Haruka Yamaguchi, Nanase Yamamoto, Yutaka Wagu, Mathieu Paoletti, David B Archer, Paul S Dyer, Katsuhiko Kitamoto

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 68 citations in OpenAlex.

  1. Article
  2. Article
  3. The postbiotic potential ofFrontiers in microbiology · 2024
    Review
  4. Article
  5. Trace copper-mediated asexual developmentFrontiers in microbiology · 2023
    Article
  6. Biological Characteristics ofInternational journal of molecular sciences · 2021
    Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Classification ofStudies in mycology · 2020
    Article
  12. Article
  13. Evolution of Aspergillus oryzae before and after domestication inferred by large-scale comparative genomic analysis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2019
    Article
  14. Article
  15. Article
  16. Article
  17. Volatiles Mediated Interactions BetweenFrontiers in microbiology · 2018
    Article
  18. Article
  19. Sex and the Imperfect Fungi.Microbiology spectrum · 2017
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Ryuta WadaDepartment of Biotechnology, The University of Tokyo, Tokyo, Japana; Bio’c Co., Ltd., Toyohashi, Japan.
Jun-Ichi Maruyama
Haruka Yamaguchi
Nanase Yamamoto
Yutaka Wagu
Mathieu Paoletti
David B Archer
Paul S Dyer
Katsuhiko Kitamoto
The University of Tokyo · JPUniversity of Nottingham · GB

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

The potential for sexual reproduction in Aspergillus oryzae was assessed by investigating the presence and functionality of MAT genes. Previous genome studies had identified a MAT1-1 gene in the reference strain RIB40. We now report the existence of a complementary MAT1-2 gene and the sequencing of an idiomorphic region from A. oryzae strain AO6. This allowed the development of a PCR diagnostic assay, which detected isolates of the MAT1-1 and MAT1-2 genotypes among 180 strains assayed, including industrial tane-koji isolates. Strains used for sake and miso production showed a near-1:1 ratio of the MAT1-1 and MAT1-2 mating types, whereas strains used for soy sauce production showed a significant bias toward the MAT1-2 mating type. MAT1-1 and MAT1-2 isogenic strains were then created by genetic manipulation of the resident idiomorph, and gene expression was compared by DNA microarray and quantitative real-time PCR (qRT-PCR) methodologies under conditions in which MAT genes were expressed. Thirty-three genes were found to be upregulated more than 10-fold in either the MAT1-1 host strain or the MAT1-2 gene replacement strain relative to each other, showing that both the MAT1-1 and MAT1-2 genes functionally regulate gene expression in A. oryzae in a mating type-dependent manner, the first such report for a supposedly asexual fungus. MAT1-1 expression specifically upregulated an α-pheromone precursor gene, but the functions of most of the genes affected were unknown. The results are consistent with a heterothallic breeding system in A. oryzae, and prospects for the discovery of a sexual cycle are discussed.

Indexed as

Genes, Mating Type, FungalAmino Acid SequenceAspergillus oryzaeDNA, FungalDNA PrimersFood MicrobiologyFungiGene DeletionGene Expression ProfilingGenotypeMicroarray AnalysisMolecular Sequence DataOligonucleotide Array Sequence AnalysisReal-Time Polymerase Chain ReactionSequence Analysis, DNASequence Homology, Amino AcidDNA, FungalDNA Primers

Identifiers

PMID22327593
PMCPMC3318824
OpenAlexW2161231593

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.