Evidence map›Paper›PMID 22327569›Full record

ArticleNature immunology2012

SAMHD1 restricts the replication of human immunodeficiency virus type 1 by depleting the intracellular pool of deoxynucleoside triphosphates.

Hichem Lahouassa, Waaqo Daddacha, Henning Hofmann, Diana Ayinde, Eric C Logue, Loïc Dragin, Nicolin Bloch, Claire Maudet, Matthieu Bertrand, Thomas Gramberg and 9 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Nature immunology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 565 papers.

0numbers the graph read from it
0cells of the map it votes in
565citing papers in PubMed
40.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

565 citing papers in PubMed, 807 citations in OpenAlex.

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  14. Transition metal activation reframes SAMHD1 regulation.bioRxiv : the preprint server for biology · 2026
    Article
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505 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 3 countries.

Hichem Lahouassa *Inserm, U1016, Institut Cochin, 27 rue du faubourg St Jacques, Bat G. Roussy, 75014 Paris France.
Waaqo Daddacha *Department of Microbiology and Immunology, University of Rochester Medical Center, 601 Elmwood Avenue, Rochester, NY 14642, USA.
Henning HofmannNew York University School of Medicine, Microbiology Department, 550 First Ave., New York, NY 10016, USA.
Diana AyindeInserm, U1016, Institut Cochin, 27 rue du faubourg St Jacques, Bat G. Roussy, 75014 Paris France.
Eric C LogueNew York University School of Medicine, Microbiology Department, 550 First Ave., New York, NY 10016, USA.
Loïc DraginInserm, U1016, Institut Cochin, 27 rue du faubourg St Jacques, Bat G. Roussy, 75014 Paris France.
Nicolin BlochNew York University School of Medicine, Microbiology Department, 550 First Ave., New York, NY 10016, USA.
Claire MaudetInserm, U1016, Institut Cochin, 27 rue du faubourg St Jacques, Bat G. Roussy, 75014 Paris France.
Matthieu BertrandInserm, U1016, Institut Cochin, 27 rue du faubourg St Jacques, Bat G. Roussy, 75014 Paris France.
Thomas GrambergVirologisches Institut, Klinische und Molekulare Virologie, Universitat Erlangen-Nurnberg, 91054 Erlangen.
Gianfranco PancinoInstitut Pasteur, Unité de Régulation des Infections Rétrovirales, 25 rue du Dr Roux, 75724 Paris Cedex 15, France.
Stéphane PrietLaboratoire d'Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS-Universitéd'Aix-Marseille, 13288 Marseille cedex 09, France.
Bruno CanardLaboratoire d'Architecture et Fonction des Macromolécules Biologiques, UMR6098, CNRS-Universitéd'Aix-Marseille, 13288 Marseille cedex 09, France.
Nadine LaguetteInstitut de Génétique Humaine, Laboratoire de Virologie Moléculaire, CNRS UPR1142, Montpellier 34000, France.
Monsef BenkiraneInstitut de Génétique Humaine, Laboratoire de Virologie Moléculaire, CNRS UPR1142, Montpellier 34000, France.
Catherine TransyInserm, U1016, Institut Cochin, 27 rue du faubourg St Jacques, Bat G. Roussy, 75014 Paris France.
Nathaniel R LandauNew York University School of Medicine, Microbiology Department, 550 First Ave., New York, NY 10016, USA.
Baek KimDepartment of Microbiology and Immunology, University of Rochester Medical Center, 601 Elmwood Avenue, Rochester, NY 14642, USA.
Florence Margottin-GoguetInserm, U1016, Institut Cochin, 27 rue du faubourg St Jacques, Bat G. Roussy, 75014 Paris France.
New York University · USCentre National de la Recherche Scientifique · FRAix-Marseille Université · FRCentre de Gestion Scientifique · FRDélégation Paris 5 · FRUniversity of Rochester Medical Center · USFriedrich-Alexander-Universität Erlangen-Nürnberg · DEInserm · FRInstitut de Génétique Moléculaire de Montpellier · FRInstitut Pasteur · FR

Funding

Replication fidelity and lentiviral pathogenesisR01AI049781 · NIAID · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2002 to 2016
$4.9M
SAMHD1 controls dNTP pool and HIV sensitivity to NRTIsR01GM104198 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIM, BAEK · 2012 to 2018
$2.3M
Replicational Fidelity and Lentivial PathogenesisR56AI049781 · NIAID · EMORY UNIVERSITY · PI KIM, BAEK · 2017 to 2017
$390k
Mechanistic Interplays between cPP Tract and RT Inhibitor Sensitivity of HIV-1F31GM095190 · NIGMS · UNIVERSITY OF ROCHESTER · PI DADDACHA, WAAQO BORU · 2011 to 2013
$109k
European Research Council 250333NIAID NIH HHS AI049781NIAID NIH HHS R01 AI049781NIAID NIH HHS R56 AI049781NIGMS NIH HHS F31 GM095190NIGMS NIH HHS R01 GM104198PHS HHS A1067059PHS HHS A1077401
6 · The paper itself

Abstract

SAMHD1 restricts the infection of dendritic and other myeloid cells by human immunodeficiency virus type 1 (HIV-1), but in lentiviruses of the simian immunodeficiency virus of sooty mangabey (SIVsm)-HIV-2 lineage, SAMHD1 is counteracted by the virion-packaged accessory protein Vpx. Here we found that SAMHD1 restricted infection by hydrolyzing intracellular deoxynucleoside triphosphates (dNTPs), lowering their concentrations to below those required for the synthesis of the viral DNA by reverse transcriptase (RT). SAMHD1-mediated restriction was alleviated by the addition of exogenous deoxynucleosides. An HIV-1 with a mutant RT with low affinity for dNTPs was particularly sensitive to SAMHD1-mediated restriction. Vpx prevented the SAMHD1-mediated decrease in dNTP concentration and induced the degradation of human and rhesus macaque SAMHD1 but had no effect on mouse SAMHD1. Nucleotide-pool depletion could be a general mechanism for protecting cells from infectious agents that replicate through a DNA intermediate.

Indexed as

Virus ReplicationAnimalsCell LineHIV-1HumansIntracellular SpaceMacaca mulattaMacrophagesMiceMonomeric GTP-Binding ProteinsNucleotidesSAM Domain and HD Domain-Containing Protein 1Monomeric GTP-Binding ProteinsNucleotidesSAM Domain and HD Domain-Containing Protein 1SAMHD1 protein, humanSamhd1 protein, mouse

Identifiers

PMID22327569
PMCPMC3771401
OpenAlexW1992007798

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.