Evidence map›Paper›PMID 22327072›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2012

Frequency of epitope-specific naive CD4(+) T cells correlates with immunodominance in the human memory repertoire.

William W Kwok, Venus Tan, Laurie Gillette, Christopher T Littell, Michele A Soltis, Rebecca B LaFond, Junbao Yang, Eddie A James, Jonathan H DeLong

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers.

0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

74 citing papers in PubMed, 118 citations in OpenAlex.

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  3. Identification of multiple public TCR repertoires in chronic beryllium disease.Journal of immunology (Baltimore, Md. : 1950) · 2014
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14 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

William W KwokBenaroya Research Institute at Virginia Mason, Seattle, WA 98101-2795, USA. bkwok@benaroyaresearch.org
Venus Tan
Laurie Gillette
Christopher T Littell
Michele A Soltis
Rebecca B LaFond
Junbao Yang
Eddie A James
Jonathan H DeLong
Benaroya Research InstituteMadigan Army Medical Center · USVirginia Mason Medical Center · US

Funding

NIAID NIH HHS HHSN266200400028CNIAID NIH HHS HHSN272200900043C
6 · The paper itself

Abstract

The frequency of epitope-specific naive CD4(+) T cells in humans has not been extensively examined. In this study, a systematic approach was used to examine the frequency of CD4(+) T cells that recognize the protective Ag of Bacillus anthracis in both anthrax vaccine-adsorbed vaccinees and nonvaccinees with HLA-DRB1*01:01 haplotypes. Three epitopes were identified that had distinct degrees of immunodominance in subjects that had received the vaccine. Average naive precursor frequencies of T cells specific for these different epitopes in the human repertoire ranged from 0.2 to 10 per million naive CD4(+) T cells, which is comparable to precursor frequencies observed in the murine repertoire. Frequencies of protective Ag-specific T cells were two orders of magnitude higher in immunized subjects than in nonvaccinees. The frequencies of epitope-specific memory CD4(+) T cells in vaccinees were directly correlated with the frequencies of precursors in the naive repertoire. At the level of TCR usage, at least one preferred Vβ in the naive repertoire was present in the memory repertoire. These findings implicate naive frequencies as a crucial factor in shaping the epitope specificity of memory CD4(+) T cell responses.

Indexed as

Anthrax VaccinesCD4-Positive T-LymphocytesCell SeparationEpitopes, T-LymphocyteFlow CytometryHLA-DRB1 ChainsHumansImmunodominant EpitopesImmunologic MemoryAnthrax VaccinesEpitopes, T-LymphocyteHLA-DRB1 ChainsImmunodominant Epitopes

Identifiers

PMID22327072
PMCPMC3997369
OpenAlexW2161348982

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.