Evidence map›Paper›PMID 22325356›Full record

ArticleMolecular cell2012

Intrinsic negative feedback governs activation surge in two-component regulatory systems.

Won-Sik Yeo, Igor Zwir, Henry V Huang, Dongwoo Shin, Akinori Kato, Eduardo A Groisman

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 52 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Colistin Resistance in Bacteria: Current Updates on Mechanism of Action and Combating Strategies.The Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2026
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Microbial Adaptation to Enhance Stress Tolerance.Frontiers in microbiology · 2022
    Review
  15. How the PhoP/PhoQ System Controls Virulence and MgMicrobiology and molecular biology reviews : MMBR · 2021
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Won-Sik YeoSection of Microbial Pathogenesis, Yale School of Medicine, 295 Congress Avenue, 354D, New Haven, CT 06536, USA.
Igor Zwir
Henry V Huang
Dongwoo Shin
Akinori Kato
Eduardo A Groisman
Washington University in St. Louis · USHoward Hughes Medical Institute · US

Funding

REGULATION OF SALMONELLA VIRULENCE BY THE PHOP PROTEINR01AI049561 · NIAID · YALE UNIVERSITY · PI Eduardo Groisman · 2001 to 2026
$9.7M
MOLECULAR AND STRUCTURAL BASES OF POLYMYXIN RESISTANCER01AI042236 · NIAID · YALE UNIVERSITY · PI GROISMAN, EDUARDO · 1998 to 2013
$3.0M
Co-opting ancestral regulatory systems to control bacterial virulenceR56AI042236 · NIAID · YALE UNIVERSITY · PI GROISMAN, EDUARDO · 2015 to 2015
$368k
NIAID NIH HHS AI42236NIAID NIH HHS AI49561NIAID NIH HHS R01 AI042236NIAID NIH HHS R01 AI049561NIAID NIH HHS R56 AI042236
6 · The paper itself

Abstract

PhoP and PhoQ comprise a two-component system in the bacterium Salmonella enterica. PhoQ is the sensor kinase/phosphatase that modifies the phosphorylation state of the regulator PhoP in response to stimuli. The amount of phosphorylated PhoP surges after activation, then declines to reach a steady-state level. We now recapitulate this surge in vitro by incubating PhoP and PhoQ with ATP and ADP. Mathematical modeling identified PhoQ's affinity for ADP as the key parameter dictating phosphorylated PhoP levels, as ADP promotes PhoQ's phosphatase activity toward phosphorylated PhoP. The lid covering the nucleotide-binding pocket of PhoQ governs the kinase to phosphatase switch because a lid mutation that decreased ADP binding compromised PhoQ's phosphatase activity in vitro and resulted in sustained expression of PhoP-dependent mRNAs in vivo. This feedback mechanism may curtail futile ATP consumption because ADP not only stimulates PhoQ's phosphatase activity but also inhibits ATP binding necessary for the kinase reaction.

Indexed as

Feedback, PhysiologicalAdenosine TriphosphateAmino Acid SubstitutionBacterial ProteinsBinding SitesComputer SimulationKineticsModels, BiologicalMutagenesis, Site-DirectedProtein BindingProtein Structure, TertiarySalmonella typhimuriumSignal TransductionTranscription FactorsAdenosine TriphosphateBacterial ProteinsPhoP protein, BacteriaPhoQ protein, BacteriapmrA protein, BacteriaPmrB protein, bacteriaTranscription Factors

Identifiers

PMID22325356
PMCPMC3713471
OpenAlexW2000566667

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.