Evidence map›Paper›PMID 22325351›Full record

ArticleMolecular cell2012

Direct recruitment of polycomb repressive complex 1 to chromatin by core binding transcription factors.

Ming Yu, Tali Mazor, Hui Huang, Hsuan-Ting Huang, Katie L Kathrein, Andrew J Woo, Candace R Chouinard, Adam Labadorf, Thomas E Akie, Tyler B Moran and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
0.1field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 9 citations in OpenAlex.

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  17. Review
  18. Critical Roles of Polycomb Repressive Complexes in Transcription and Cancer.International journal of molecular sciences · 2022
    Review
  19. Epigenomes · 2022
    Review
  20. The Spatiotemporal Expression of Ring1B in the Postnatal Mouse Cochlea.The journal of international advanced otology · 2022
    Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Ming YuChildren's Hospital Boston and Dana-Farber Cancer Institute, Harvard Medical School, Boston, MA 02115, USA.
Tali Mazor
Hui Huang
Hsuan-Ting Huang
Katie L Kathrein
Andrew J Woo
Candace R Chouinard
Adam Labadorf
Thomas E Akie
Tyler B Moran
Huafeng Xie
Sima Zacharek
Ichiro Taniuchi
Robert G Roeder
Carla F Kim
Leonard I Zon
Ernest Fraenkel
Alan B Cantor
Dana-Farber Cancer Institute · USMassachusetts Institute of Technology · USHarvard University · USHarvard Stem Cell Institute · USHoward Hughes Medical Institute · USRIKEN Center for Integrative Medical Sciences · JPRockefeller University · US

Funding

Tumor Cell Networks CenterU54CA112967 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LAUFFENBURGER, DOUGLAS A · 2004 to 2015
$26.2M
TOXICOLOGY CORE UNITP30ES002109 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEVINE, STUART S · 1985 to 2020
$25.6M
EMBRYONIC HEMATOPOIESISR01HL048801 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ZON, LEONARD IRA · 1992 to 2016
$5.7M
A Systems Biology Approach to Reveal Huntington's Disease MechanismsR01GM089903 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI FRAENKEL, ERNEST · 2010 to 2014
$2.4M
Proteomic Approach to Further Understanding the Role of*R01HL082952 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI CANTOR, ALAN B. · 2005 to 2008
$1.3M
NCI NIH HHS U54 CA112967NCI NIH HHS U54-CA112967NHLBI NIH HHS R01 HL048801NHLBI NIH HHS R01 HL082952NHLBI NIH HHS R01-HL082952NIEHS NIH HHS P30 ES002109NIEHS NIH HHS P30-ES002109NIGMS NIH HHS R01 GM089903NIGMS NIH HHS R01-GM089903
6 · The paper itself

Abstract

Polycomb repressive complexes (PRCs) play key roles in developmental epigenetic regulation. Yet the mechanisms that target PRCs to specific loci in mammalian cells remain incompletely understood. In this study we show that Bmi1, a core component of Polycomb Repressive Complex 1 (PRC1), binds directly to the Runx1/CBFβ transcription factor complex. Genome-wide studies in megakaryocytic cells demonstrate significant chromatin occupancy overlap between the PRC1 core component Ring1b and Runx1/CBFβ and functional regulation of a considerable fraction of commonly bound genes. Bmi1/Ring1b and Runx1/CBFβ deficiencies generate partial phenocopies of one another in vivo. We also show that Ring1b occupies key Runx1 binding sites in primary murine thymocytes and that this occurs via PRC2-independent mechanisms. Genetic depletion of Runx1 results in reduced Ring1b binding at these sites in vivo. These findings provide evidence for site-specific PRC1 chromatin recruitment by core binding transcription factors in mammalian cells.

Indexed as

AnimalsCell LineChromatinChromatography, AffinityCluster AnalysisCore Binding Factor Alpha 2 SubunitCore Binding Factor beta SubunitGene Expression ProfilingGene Expression RegulationGene Knockdown TechniquesHematopoietic Stem CellsMegakaryocytesMiceMice, Inbred C57BLMice, KnockoutNuclear ProteinsBmi1 protein, mouseCbfb protein, mouseChromatinCore Binding Factor Alpha 2 SubunitCore Binding Factor beta SubunitNuclear ProteinsPolycomb-Group ProteinsPolycomb Repressive Complex 1Proto-Oncogene ProteinsRepressor ProteinsRnf2 protein, mouseRunx1 protein, mouseUbiquitin-Protein Ligases

Identifiers

PMID22325351
PMCPMC3278717
OpenAlexW1499419026

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.