Evidence map›Paper›PMID 22323750›Full record

ArticleNeurology2012

Domain-dependent clustering and genotype-phenotype analysis of LGI1 mutations in ADPEAF.

Yuan-Yuan Ho, Iuliana Ionita-Laza, Ruth Ottman

Open access · bronzeAbstract read
In one paragraph

Article in Neurology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. LGI1 Autoantibodies Enhance Synaptic Transmission by Presynaptic KNeurology(R) neuroimmunology & neuroinflammation · 2024
    Article
  3. Celecoxib Ameliorates Seizure Susceptibility in Autosomal Dominant Lateral Temporal Epilepsy.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2018
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. LGI Proteins and Epilepsy in Human and Animals.Journal of veterinary internal medicine
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Yuan-Yuan HoDepartment of Psychiatry, Columbia University, New York, NY, USA.
Iuliana Ionita-Laza
Ruth Ottman
Columbia University · US

Funding

GENETICS OF AD PARTIAL EPILEPSY WITH AUDITORY FEATURESR01NS036319 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI OTTMAN, RUTH · 1997 to 2007
$3.7M
Novel Statistical methods for DNA Sequencing Data, and applications to Autism.R01MH095797 · NIMH · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI IONITA, IULIANA · 2012 to 2022
$3.1M
Whole-genome sequencing in multiplex epilepsy familiesRC2NS070344 · NINDS · DUKE UNIVERSITY · PI GOLDSTEIN, DAVID B., OTTMAN, RUTH · 2009 to 2010
$2.0M
NIMH NIH HHS R01 MH095797NINDS NIH HHS R01 NS036319NINDS NIH HHS R01-NS036319NINDS NIH HHS RC2-NS070344
6 · The paper itself

Abstract

objectiveIn families with autosomal dominant partial epilepsy with auditory features (ADPEAF) with mutations in the LGI1 gene, we evaluated clustering of mutations within the gene and associations of penetrance and phenotypic features with mutation location and predicted effect (truncation or missense).

methodsWe abstracted clinical and molecular information from the literature for all 36 previously published ADPEAF families with LGI1 mutations. We used a sliding window approach to analyze mutation clustering within the gene. Each mutation was mapped to one of the gene's 2 major functional domains, N-terminal leucine-rich repeats (LRRs) and C-terminal epitempin (EPTP) repeats, and classified according to predicted effect on the encoded protein (truncation vs missense). Analyses of phenotypic features (age at onset and occurrence of auditory symptoms) in relation to mutation site and predicted effect included 160 patients with idiopathic focal unprovoked seizures from the 36 families.

resultsADPEAF-causing mutations clustered significantly in the LRR domain (exons 3-5) of LGI1 (p = 0.026). Auditory symptoms were less frequent in individuals with truncation mutations in the EPTP domain than in those with other mutation type/domain combinations (58% vs 80%, p = 0.018).

conclusionThe LRR region of the LGI1 gene is likely to play a major role in pathogenesis of ADPEAF.

Indexed as

Age of OnsetDatabases, FactualEpilepsy, Frontal LobeGenetic Association StudiesHumansIntracellular Signaling Peptides and ProteinsMutationProteinsSleep Wake DisordersIntracellular Signaling Peptides and ProteinsLGI1 protein, humanProteins

Identifiers

PMID22323750
PMCPMC3280014
OpenAlexW2072934343

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.