Evidence map›Paper›PMID 22323542›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2012

A new hypersensitive site, HS10, and the enhancers, E3' and Ed, differentially regulate Igκ gene expression.

Xiaorong Zhou, Yougui Xiang, Xiaoling Ding, William T Garrard

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Xiaorong ZhouDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yougui Xiang
Xiaoling Ding
William T Garrard
The University of Texas Southwestern Medical Center · USNantong University · CN

Funding

FUNCTION OF THE SUBUNITS OF EUKARYOTIC CHROMOSOMESR01GM029935 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI GARRARD, WILLIAM · 1985 to 2013
$3.0M
Reorganization of Higher-Order Chromatin Structures During Igk Gene ActivationR01AI067906 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI GARRARD, WILLIAM · 2007 to 2011
$1.9M
NIAID NIH HHS AI067906NIAID NIH HHS R01 AI067906NIGMS NIH HHS GM29935NIGMS NIH HHS R01 GM029935
6 · The paper itself

Abstract

The mouse Igκ gene locus has three known transcriptional enhancers: an intronic enhancer (Ei), a 3' enhancer (E3'), and a further downstream enhancer (Ed). We previously discovered, using the chromosome conformation-capture technique, that Ei and E3' interact with a novel DNA sequence near the 3' end of the Igκ locus, specifically in B cells. In the present investigation, we examined the function of this far downstream element. The sequence is evolutionarily conserved and exhibits a plasmacytoma cell-specific DNase I-hypersensitive site in chromatin, henceforth termed HS10 in the locus. HS10 acts as a coactivator of E3' in transient transfection assays. Although HS10(-/-) mice exhibited normal patterns of B cell development, they were tested further along with E3'(-/-) and Ed(-/-) mice for their Igκ expression levels in plasma cells, as well as for both allelic and isotype exclusion in splenic B cells. HS10(-/-) and Ed(-/-), but not E3'(-/-), mice exhibited 2.5-fold lower levels of Igκ expression in antigenically challenged plasma cells. E3'(-/-) mice, but not HS10(-/-) mice, exhibited impaired IgL isotype and allelic exclusion in splenic B cells. We have suggestive results that Ed may also weakly participate in these processes. In addition, HS10(-/-) mice no longer exhibited regional chromosome interactions with E3', and they exhibited modestly reduced somatic hypermutation in the Jκ-Cκ intronic region in germinal center B cells from Peyer's patches. We conclude that the HS10, E3', and Ed differentially regulate Igκ gene dynamics.

Indexed as

AnimalsBase SequenceBlotting, SouthernB-LymphocytesCell DifferentiationCell SeparationEnhancer Elements, GeneticEnzyme-Linked Immunosorbent AssayFlow CytometryGene Expression RegulationGenes, ImmunoglobulinImmunoglobulinsMiceMice, Inbred C57BLMice, KnockoutMolecular Sequence DataIgKImmunoglobulins

Identifiers

PMID22323542
PMCPMC3294001
OpenAlexW2141786556

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.