Evidence map›Paper›PMID 22323461›Full record

ArticleInvestigative ophthalmology & visual science2012

An allele of microtubule-associated protein 1A (Mtap1a) reduces photoreceptor degeneration in Tulp1 and Tub Mutant Mice.

Dennis M Maddox, Sakae Ikeda, Akihiro Ikeda, Weidong Zhang, Mark P Krebs, Patsy M Nishina, Jürgen K Naggert

Open access · bronzeAbstract read
In one paragraph

Article in Investigative ophthalmology & visual science, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Deciphering complexity:Frontiers in genetics · 2024
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  5. Review
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  10. Genetic modifiers and oligogenic inheritance.Cold Spring Harbor perspectives in medicine · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Dennis M MaddoxJackson Laboratory, Bar Harbor, Maine 04609, USA.
Sakae Ikeda
Akihiro Ikeda
Weidong Zhang
Mark P Krebs
Patsy M Nishina
Jürgen K Naggert
Jackson Laboratory · US

Funding

Shared Resource ManagementP30CA034196 · NCI · JACKSON LABORATORY · PI William Carl Skarnes · 1985 to 2026
$61.9M
Molecular and Physiological Function of the Tubby Gene FamilyR01DK085441 · NIDDK · JACKSON LABORATORY · PI NAGGERT, JUERGEN K. · 2010 to 2014
$1.9M
NCI NIH HHS 5P30CA034196NCI NIH HHS P30 CA034196NIDDK NIH HHS 5R01DK085441NIDDK NIH HHS R01 DK085441
6 · The paper itself

Abstract

purposeTo identify genes that modify photoreceptor cell loss in the retinas of homozygous Tulp1(tm1Pjn) and Tub(tub) mice, which exhibit juvenile retinitis pigmentosa.

methodsModifier loci were identified by genetic quantitative trait locus analysis. F2 Tulp1(tm1Pjn/tm1Pjn) mutant mice from a B6-Tulp1(tm1Pjn/tm1Pjn) × AKR/J intercross were genotyped with a panel of single nucleotide polymorphism markers and phenotyped by histology for photoreceptor nuclei remaining at 9 weeks of age. Genotype and phenotype data were correlated and examined with Pseudomarker 2.02 using 128 imputations to map modifier loci. Thresholds for the 63%, 10%, 5%, and 1% significance levels were obtained from 100 permutations. A significant, protective candidate modifier was identified by bioinformatic analysis and confirmed by crossing transgenic mice bearing a protective allele of this gene with Tulp1- and Tub-deficient mice.

resultsA significant, protective modifier locus on chromosome 2 and a suggestive locus on chromosome 13 that increases photoreceptor loss were identified in a B6-Tulp1(tm1Pjn/tm1Pjn) × AKR/J intercross. The chromosome 2 locus mapped near Mtap1a, which encodes a protein associated with microtubule-based intracellular transport and synapse function. The protective Mtap1a(129P2/OlaHsd) allele was shown to reduce photoreceptor loss in both Tulp1(tm1Pjn/tm1Pjn) and Tub(tub/tub) mice.

conclusionsIt was demonstrated that the gene Mtap1a, which modifies hearing loss in Tub(tub/tub) mice, also modifies retinal degeneration in Tub(tub/tub) and Tulp1(tm1Pjn/tm1Pjn) mice. These results suggest that functionally nonredundant members of the TULP family (TUB and TULP1) share a common functional interaction with MTAP1A.

Indexed as

Adaptor Proteins, Signal TransducingAllelesAnimalsDisease Models, AnimalEye ProteinsMiceMice, Inbred AKRMicrotubule-Associated ProteinsPhotoreceptor Cells, VertebratePolymorphism, Single NucleotideProteinsRetinal Cone Photoreceptor CellsRetinal DegenerationRetinal Rod Photoreceptor CellsRetinitis PigmentosaAdaptor Proteins, Signal TransducingEye ProteinsMAP1A protein, mouseMicrotubule-Associated ProteinsProteinsTub protein, mouseTulp1 protein, mouse

Identifiers

PMID22323461
PMCPMC3339923
OpenAlexW2066915491

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.