Evidence map›Paper›PMID 22321794›Full record

ArticleJournal of molecular biology2012

The structures of coiled-coil domains from type III secretion system translocators reveal homology to pore-forming toxins.

Michael L Barta, Nicholas E Dickenson, Mrinalini Patil, Andrew Keightley, Gerald J Wyckoff, William D Picking, Wendy L Picking, Brian V Geisbrecht

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of molecular biology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 66 citations in OpenAlex.

  1. Protein-centric mechanisms of typhoidalFrontiers in cellular and infection microbiology · 2026
    Review
  2. Targeting Type III Secretion System usingIndian journal of microbiology · 2025
    Review
  3. Speaking the host language: howMicrobiology (Reading, England) · 2023
    Review
  4. Cryo-EM of the injectisome and type III secretion systems.Current opinion in structural biology · 2022
    Review
  5. Cryo-EM structure of the needle filament tip complex of theProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  6. TheMicroorganisms · 2021
    Review
  7. Review
  8. Structural Insights ofFrontiers in cellular and infection microbiology · 2021
    Article
  9. The type III secretion system needle, tip, and translocon.Protein science : a publication of the Protein Society · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Michael L BartaSchool of Biological Sciences, University of Missouri-Kansas City, Kansas City, MO 64110, USA.
Nicholas E Dickenson
Mrinalini Patil
Andrew Keightley
Gerald J Wyckoff
William D Picking
Wendy L Picking
Brian V Geisbrecht
Oklahoma State University · USUniversity of Missouri–Kansas City · US

Funding

Control of Type III secretion in Shigella by lpaDR01AI067858 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI PICKING, WENDY L. · 2007 to 2011
$1.9M
Structure Function Analysis of Staphylococcal Complement InhibitorsR01AI071028 · NIAID · UNIVERSITY OF MISSOURI KANSAS CITY · PI GEISBRECHT, BRIAN V · 2008 to 2012
$1.5M
A Mechanism for Shigella Type III Secretion ActivationR21AI090149 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI PICKING, WILLIAM D. · 2010 to 2011
$407k
Probing localiztion, interactions, and effector properties of Shigella lpaDF32AI084203 · NIAID · OKLAHOMA STATE UNIVERSITY STILLWATER · PI DICKENSON, NICHOLAS E · 2009 to 2010
$93k
NIAID NIH HHS AI067858NIAID NIH HHS AI071028NIAID NIH HHS AI084203NIAID NIH HHS AI090149NIAID NIH HHS F32 AI084203NIAID NIH HHS R01 AI067858NIAID NIH HHS R01 AI071028NIAID NIH HHS R21 AI090149
6 · The paper itself

Abstract

Many pathogenic Gram-negative bacteria utilize type III secretion systems (T3SSs) to alter the normal functions of target cells. Shigella flexneri uses its T3SS to invade human intestinal cells to cause bacillary dysentery (shigellosis) that is responsible for over one million deaths per year. The Shigella type III secretion apparatus is composed of a basal body spanning both bacterial membranes and an exposed oligomeric needle. Host altering effectors are secreted through this energized unidirectional conduit to promote bacterial invasion. The active needle tip complex of S. flexneri is composed of a tip protein, IpaD, and two pore-forming translocators, IpaB and IpaC. While the atomic structure of IpaD has been elucidated and studied, structural data on the hydrophobic translocators from the T3SS family remain elusive. We present here the crystal structures of a protease-stable fragment identified within the N-terminal regions of IpaB from S. flexneri and SipB from Salmonella enterica serovar Typhimurium determined at 2.1 Å and 2.8 Å limiting resolution, respectively. These newly identified domains are composed of extended-length (114 Å in IpaB and 71 Å in SipB) coiled-coil motifs that display a high degree of structural homology to one another despite the fact that they share only 21% sequence identity. Further structural comparisons also reveal substantial similarity to the coiled-coil regions of pore-forming proteins from other Gram-negative pathogens, notably, colicin Ia. This suggests that these mechanistically separate and functionally distinct membrane-targeting proteins may have diverged from a common ancestor during the course of pathogen-specific evolutionary events.

Indexed as

Amino Acid SequenceBacterial ProteinsColicinsCrystallography, X-RayMembrane ProteinsModels, MolecularMolecular Sequence DataProtein Structure, TertiarySalmonella typhimuriumSequence Homology, Amino AcidShigella flexneriBacterial ProteinsColicinsinvasion protein B, Salmonella typhimuriumipaB protein, ShigellaMembrane Proteins

Identifiers

PMID22321794
PMCPMC3304007
OpenAlexW2162310062

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.