Evidence map›Paper›PMID 22320385›Full record

ArticleJournal of proteome research2012

Annotation of a serum N-glycan library for rapid identification of structures.

Danielle Aldredge, Hyun Joo An, Ning Tang, Keith Waddell, Carlito B Lebrilla

Abstract read
In one paragraph

Article in Journal of proteome research, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 66 papers.

0numbers the graph read from it
0cells of the map it votes in
66citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

66 citing papers in PubMed.

  1. Isomeric diversity of GlcNAc(ManScientific reports · 2026
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  4. Article
  5. Review
  6. Article
  7. Identification of the High MannoseAnalytical chemistry · 2023
    Article
  8. Article
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  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Serum Protein N-Glycans in Colostrum and Mature Milk of Chinese Mothers.Journal of agricultural and food chemistry · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Article

6 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Danielle AldredgeDepartment of Chemistry, University of California , Davis, California 95616, United States.
Hyun Joo An
Ning Tang
Keith Waddell
Carlito B Lebrilla

Funding

The incorporation of human milk oligosaccharides in brain glycoconjugatesR01GM049077 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI LEBRILLA, CARLITO B · 1999 to 2024
$6.3M
Necrotizing Enterocolitis: Prevention and PredictionR01HD059127 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEBRILLA, CARLITO B, MILLS, DAVID ANDREW · 2008 to 2012
$3.1M
Structures, Functions, & Genetic Diversity of Oligosaccharides in MilkR01HD061923 · NICHD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEBRILLA, CARLITO B · 2009 to 2013
$1.6M
Glycomics Equipment: NanoLC CHIP-QTOF Mass SpectrometerS10RR027639 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LEBRILLA, CARLITO B · 2010 to 2010
$500k
NCRR NIH HHS S10 RR027639NICHD NIH HHS R01 HD059127NICHD NIH HHS R01HD059127NICHD NIH HHS R01 HD061923NIGMS NIH HHS R01 GM049077NIGMS NIH HHS R01GM049077
6 · The paper itself

Abstract

Glycosylation is one of the most common post-translational modifications of proteins and has been shown to change with various pathological states including cancer. Global glycan profiling of human serum based on mass spectrometry has already led to several promising markers for diseases. The changes in glycan structure can result in altered monosaccharide composition as well as in the linkages between the monosaccharides. High-throughput glycan structural elucidation is not possible because of the lack of a glycan template to expedite identification. In an effort toward rapid profiling and identification of glycans, we have constructed a library of structures for the serum glycome to aid in the rapid identification of serum glycans. N-Glycans from human serum glycoproteins are used as a standard and compiled into a library with exact structure (composition and linkage), liquid chromatography retention time, and accurate mass. Development of the library relies on highly reproducible nanoLC-MS retention times. Tandem MS and exoglycosidase digestions were used for structural elucidation. The library currently contains over 300 entries with 50 structures completely elucidated and over 60 partially elucidated structures. This database is steadily growing and will be used to rapidly identify glycans in unknown biological samples.

Indexed as

Databases, ProteinCarbohydrate ConformationCarbohydrate SequenceChromatography, High Pressure LiquidGlycoproteinsGlycoside HydrolasesGlycosylationHumansMolecular Sequence AnnotationMolecular Sequence DataPolysaccharidesProtein IsoformsProtein Processing, Post-TranslationalReference StandardsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTandem Mass SpectrometryGlycoproteinsGlycoside HydrolasesPolysaccharidesProtein Isoforms

Identifiers

PMID22320385
PMCPMC3292799

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.