Evidence map›Paper›PMID 22319446›Full record

ArticlePLoS pathogens2012

Genetic pathway in acquisition and loss of vancomycin resistance in a methicillin resistant Staphylococcus aureus (MRSA) strain of clonal type USA300.

Susana Gardete, Choonkeun Kim, Boris M Hartmann, Michael Mwangi, Christelle M Roux, Paul M Dunman, Henry F Chambers, Alexander Tomasz

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 130 citations in OpenAlex.

  1. The Pathogenicity Mechanisms ofInternational journal of molecular sciences · 2025
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  2. Phenotypic and genetic stepwise changes inAntimicrobial agents and chemotherapy · 2025
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  3. Antibiotics (Basel, Switzerland) · 2025
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  6. AgrA directly binds to the promoter ofAntimicrobial agents and chemotherapy · 2024
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  8. A Clinically Selected Staphylococcus aureusAntimicrobial agents and chemotherapy · 2023
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  9. Epidemiology ofAntibiotics (Basel, Switzerland) · 2023
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  10. Gausemycin A-ResistantMicroorganisms · 2023
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  11. Article
  12. Article
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  14. Molecular Basis of Non-β-Lactam Antibiotics Resistance inAntibiotics (Basel, Switzerland) · 2022
    Review
  15. Article
  16. Article
  17. Review
  18. Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Article
  20. Article

12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Susana GardeteLaboratory of Microbiology, The Rockefeller University, New York, New York, USA.
Choonkeun Kim
Boris M Hartmann
Michael Mwangi
Christelle M Roux
Paul M Dunman
Henry F Chambers
Alexander Tomasz
Rockefeller University · USUniversity of Rochester Medical Center · USIcahn School of Medicine at Mount Sinai · USUniversity of California, San Francisco · US

Funding

NIAID NIH HHS 2 R01 AI457838-11NIAID NIH HHS HHSN272201000054C
6 · The paper itself

Abstract

An isolate of the methicillin-resistant Staphylococcus aureus (MRSA) clone USA300 with reduced susceptibility to vancomycin (SG-R) (i.e, vancomycin-intermediate S. aureus, VISA) and its susceptible "parental" strain (SG-S) were recovered from a patient at the end and at the beginning of an unsuccessful vancomycin therapy. The VISA phenotype was unstable in vitro generating a susceptible revertant strain (SG-rev). The availability of these 3 isogenic strains allowed us to explore genetic correlates of antibiotic resistance as it emerged in vivo. Compared to the susceptible isolate, both the VISA and revertant strains carried the same point mutations in yycH, vraG, yvqF and lspA genes and a substantial deletion within an intergenic region. The revertant strain carried a single additional frameshift mutation in vraS which is part of two component regulatory system VraSR. VISA isolate SG-R showed complex alterations in phenotype: decreased susceptibility to other antibiotics, slow autolysis, abnormal cell division and increased thickness of cell wall. There was also altered expression of 239 genes including down-regulation of major virulence determinants. All phenotypic properties and gene expression profile returned to parental levels in the revertant strain. Introduction of wild type yvqF on a multicopy plasmid into the VISA strain caused loss of resistance along with loss of all the associated phenotypic changes. Introduction of the wild type vraSR into the revertant strain caused recovery of VISA type resistance. The yvqF/vraSR operon seems to function as an on/off switch: mutation in yvqF in strain SG-R turns on the vraSR system, which leads to increase in vancomycin resistance and down-regulation of virulence determinants. Mutation in vraS in the revertant strain turns off this regulatory system accompanied by loss of resistance and normal expression of virulence genes. Down-regulation of virulence genes may provide VISA strains with a "stealth" strategy to evade detection by the host immune system.

Indexed as

Bacterial ProteinsBase SequenceFrameshift MutationGene Expression ProfilingGenotypeHumansMaleMethicillin-Resistant Staphylococcus aureusMicrobial Sensitivity TestsMiddle AgedOligonucleotide Array Sequence AnalysisPhenotypePolymorphism, Single NucleotideSequence Analysis, DNAStaphylococcal InfectionsVancomycinBacterial ProteinsVancomycinVraS protein, Staphylococcus aureus

Identifiers

PMID22319446
PMCPMC3271070
OpenAlexW2039211642

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.