Evidence map›Paper›PMID 22319074›Full record

ArticlePlant physiology2012

A peroxidase-dependent apoplastic oxidative burst in cultured Arabidopsis cells functions in MAMP-elicited defense.

Jose A O'Brien, Arsalan Daudi, Paul Finch, Vernon S Butt, Julian P Whitelegge, Puneet Souda, Frederick M Ausubel, G Paul Bolwell

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed, 1 pooled it
25.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 1 synthesis or guideline pooled it, 228 citations in OpenAlex.

  1. Pooled it
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  12. Review
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  19. ROS and RNS Alterations in the Digestive Fluid ofPlants (Basel, Switzerland) · 2022
    Article
  20. Article

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Jose A O'BrienSchool of Biological Sciences, Royal Holloway, University of London, Egham, Surrey TW20 0EX, United Kingdom.
Arsalan Daudi
Paul Finch
Vernon S Butt
Julian P Whitelegge
Puneet Souda
Frederick M Ausubel
G Paul Bolwell
Massachusetts General Hospital · USRoyal Holloway University of London · GBUniversity of California, Los Angeles · US

Funding

Genetic Analysis of the Plant Defense ResponseR37GM048707 · NIGMS · MASSACHUSETTS GENERAL HOSPITAL · PI AUSUBEL, FREDERICK M · 2005 to 2014
$5.5M
Biotechnology and Biological Sciences Research Council BB/E021166/1NIGMS NIH HHS R37 GM048707NIGMS NIH HHS R37 GM48707
6 · The paper itself

Abstract

Perception by plants of so-called microbe-associated molecular patterns (MAMPs) such as bacterial flagellin, referred to as pattern-triggered immunity, triggers a rapid transient accumulation of reactive oxygen species (ROS). We previously identified two cell wall peroxidases, PRX33 and PRX34, involved in apoplastic hydrogen peroxide (H2O2) production in Arabidopsis (Arabidopsis thaliana). Here, we describe the generation of Arabidopsis tissue culture lines in which the expression of PRX33 and PRX34 is knocked down by antisense expression of a heterologous French bean (Phaseolus vulgaris) peroxidase cDNA construct. Using these tissue culture lines and two inhibitors of ROS generation, azide and diphenylene iodonium, we found that perxoxidases generate about half of the H2O2 that accumulated in response to MAMP treatment and that NADPH oxidases and other sources such as mitochondria account for the remainder of the ROS. Knockdown of PRX33/PRX34 resulted in decreased expression of several MAMP-elicited genes, including MYB51, CYP79B2, and CYP81F2. Similarly, proteomic analysis showed that knockdown of PRX33/PRX34 led to the depletion of various MAMP-elicited defense-related proteins, including the two cysteine-rich peptides PDF2.2 and PDF2.3. Knockdown of PRX33/PRX34 also led to changes in the cell wall proteome, including increases in enzymes involved in cell wall remodeling, which may reflect enhanced cell wall expansion as a consequence of reduced H2O2-mediated cell wall cross-linking. Comparative metabolite profiling of a CaCl2 extract of the PRX33/PRX34 knockdown lines showed significant changes in amino acids, aldehydes, and keto acids but not fatty acids and sugars. Overall, these data suggest that PRX33/PRX34-generated ROS production is involved in the orchestration of pattern-triggered immunity in tissue culture cells.

Indexed as

Respiratory BurstArabidopsisArabidopsis ProteinsCells, CulturedCell WallDNA, ComplementaryElectrophoresis, Polyacrylamide GelGene Expression Regulation, PlantGene Knockdown TechniquesHydrogen PeroxideIntracellular SpaceNADPH OxidasesOnium CompoundsPeroxidasesPhaseolusPlant ImmunityArabidopsis ProteinsAT5G47910 protein, ArabidopsisdiphenyleneiodoniumDNA, ComplementaryHydrogen PeroxideNADPH OxidasesOnium CompoundsPeroxidasesPRX33 protein, ArabidopsisPRX34 protein, ArabidopsisReceptors, Pattern RecognitionRNA, MessengerSodium Azide

Identifiers

PMID22319074
PMCPMC3320203
OpenAlexW2003931510

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.