Evidence map›Paper›PMID 22316180›Full record

ArticleParasites & vectors2012

Development of a cDNA microarray for the measurement of gene expression in the sheep scab mite Psoroptes ovis.

Stewart T G Burgess, Alison Downing, Craig A Watkins, Edward J Marr, Alasdair J Nisbet, Fiona Kenyon, Carol McNair, John F Huntley

Open access · goldAbstract read
In one paragraph

Article in Parasites & vectors, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 18 citations in OpenAlex.

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  9. DNA microarray-based gene expression profiling of estrogenic chemicals.Cellular and molecular life sciences : CMLS · 2014
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Stewart T G BurgessMoredun Research Institute, Pentlands Science Park, Bush Loan, Edinburgh, Midlothian EH26 0PZ, UK. stewart.burgess@moredun.ac.uk
Alison Downing
Craig A Watkins
Edward J Marr
Alasdair J Nisbet
Fiona Kenyon
Carol McNair
John F Huntley
Moredun Research Institute · GBUniversity of Edinburgh · GBUniversity of Strathclyde · GB

Funding

Medical Research Council MR/K001744/1
6 · The paper itself

Abstract

backgroundSheep scab is caused by the ectoparasitic mite Psoroptes ovis which initiates a profound cutaneous inflammatory response, leading to the development of the skin lesions which are characteristic of the disease. Existing control strategies rely upon injectable endectocides and acaricidal dips but concerns over residues, eco-toxicity and the development of acaricide resistance limit the sustainability of this approach. In order to identify alternative means of disease control, a deeper understanding of both the parasite and its interaction with the host are required.

methodsHerein we describe the development and utilisation of an annotated P. ovis cDNA microarray containing 3,456 elements for the measurement of gene expression in this economically important ectoparasite. The array consists of 981 P. ovis EST sequences printed in triplicate along with 513 control elements. Array performance was validated through the analysis of gene expression differences between fed and starved P. ovis mites.

resultsSequences represented on the array include homologues of major house dust mite allergens and tick salivary proteins, along with factors potentially involved in mite reproduction and xenobiotic metabolism. In order to validate the performance of this unique resource under biological conditions we used the array to analyse gene expression differences between fed and starved P. ovis mites. These analyses identified a number of house dust mite allergen homologues up-regulated in fed mites and P. ovis transcripts involved in stress responses, autophagy and chemosensory perception up-regulated in starved mites.

conclusionThe P. ovis cDNA microarray described here has been shown to be both robust and reproducible and will enable future studies to analyse gene expression in this important ectoparasite.

Indexed as

AnimalsDNA, ComplementaryExpressed Sequence TagsFemaleGene Expression ProfilingGene Expression RegulationGene LibraryHost-Pathogen InteractionsMaleMite InfestationsOligonucleotide Array Sequence AnalysisPsoroptidaeQuality ControlReal-Time Polymerase Chain ReactionReproducibility of ResultsRNADNA, ComplementaryRNA

Identifiers

PMID22316180
PMCPMC3296576
OpenAlexW2170339246

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.