Evidence map›Paper›PMID 22316138›Full record

ArticleRetrovirology2012

Spt6 levels are modulated by PAAF1 and proteasome to regulate the HIV-1 LTR.

Mirai Nakamura, Poornima Basavarajaiah, Emilie Rousset, Cyprien Beraud, Daniel Latreille, Imène-Sarah Henaoui, Irina Lassot, Bernard Mari, Rosemary Kiernan

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Review
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  6. Article
  7. Spt6 Is Essential for rRNA Synthesis by RNA Polymerase I.Molecular and cellular biology · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Mirai NakamuraLaboratoire de Régulation des Gènes, Institut de Génétique Humaine, CNRS UPR1142, Montpellier, France.
Poornima Basavarajaiah
Emilie Rousset
Cyprien Beraud
Daniel Latreille
Imène-Sarah Henaoui
Irina Lassot
Bernard Mari
Rosemary Kiernan
Institut de Génétique Humaine · FRCentre National de la Recherche Scientifique · FRUniversité Côte d'Azur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTat-mediated activation of the HIV-1 promoter depends upon a proteasome-associated factor, PAAF1, which dissociates 26S proteasome to produce 19S RP that is essential for transcriptional elongation. The effect of PAAF1 on proteasome activity could also potentially shield certain factors from proteolysis, which may be implicated in the transcriptional co-activator activity of PAAF1 towards the LTR.

resultsHere, we show that Spt6 is targeted by proteasome in the absence of PAAF1. PAAF1 interacts with the N-terminus of Spt6, suggesting that PAAF1 protects Spt6 from proteolysis. Depletion of either PAAF1 or Spt6 reduced histone occupancy at the HIV-1 promoter, and induced the synthesis of aberrant transcripts. Ectopic Spt6 expression or treatment with proteasome inhibitor partially rescued the transcription defect associated with loss of PAAF1. Transcriptional profiling followed by ChIP identified a subset of cellular genes that are regulated in a similar fashion to HIV-1 by Spt6 and/or PAAF1, including many that are involved in cancer, such as BRCA1 and BARD1.

conclusionThese results show that intracellular levels of Spt6 are fine-tuned by PAAF1 and proteasome, which is required for HIV-1 transcription and extends to cellular genes implicated in cancer.

Indexed as

Gene Expression Regulation, ViralHost-Pathogen InteractionsAdaptor Proteins, Signal TransducingChromatin ImmunoprecipitationGene Expression ProfilingHeLa CellsHIV-1HIV Long Terminal RepeatHumansProteasome Endopeptidase ComplexTranscription FactorsTranscription, GeneticAdaptor Proteins, Signal TransducingPAAF1 protein, humanProteasome Endopeptidase ComplexSUPT6H protein, humanTranscription Factors

Identifiers

PMID22316138
PMCPMC3305501
OpenAlexW2135168756

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.