Evidence map›Paper›PMID 22315404›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2012

Role of retroviral restriction factors in the interferon-α-mediated suppression of HIV-1 in vivo.

Satish K Pillai, Mohamed Abdel-Mohsen, John Guatelli, Mark Skasko, Alexander Monto, Katsuya Fujimoto, Steven Yukl, Warner C Greene, Helen Kovari, Andri Rauch and 9 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2012. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
8.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 117 citations in OpenAlex.

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  16. The impact of bone marrow stromal antigen-2 (BST2) gene variants on HIV-1 control in black South African individuals.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 10 institutions in 2 countries.

Satish K PillaiDepartment of Medicine, University of California, San Francisco, CA 94143, USA. satish.pillai@ucsf.edu
Mohamed Abdel-Mohsen
John Guatelli
Mark Skasko
Alexander Monto
Katsuya Fujimoto
Steven Yukl
Warner C Greene
Helen Kovari
Andri Rauch
Jacques Fellay
Manuel Battegay
Bernard Hirschel
Andrea Witteck
Enos Bernasconi
Bruno Ledergerber
Huldrych F Günthard
Joseph K Wong
Swiss HIV Cohort Study
University of Zurich · CHSan Francisco VA Medical Center · USOspedale regionale di Lugano · CHUniversity Hospital of Basel · CHUniversity Hospital of Geneva · CHUniversity of Bern · CHVA San Diego Healthcare System · USGladstone Institutes · USUniversity of California, San Francisco · USUniversity of St.Gallen · CH

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
HIV-1 Vpu and BST-2/CD317R37AI081668 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2014 to 2023
$4.8M
HIV-1 Vpu and BST-2/CD317R01AI081668 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2009 to 2013
$2.1M
HIV-1 Adaptation in the Central Nervous SystemR01NS051132 · NINDS · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WONG, JOSEPH K · 2005 to 2009
$1.8M
Antiviral Role of APOBEC3 in HIV/HCV Coinfected PatientsK01DA024654 · NIDA · VITALANT · PI PILLAI, SATISH KUMAR · 2008 to 2012
$902k
Role of Gut Associated Lymphoid Tissue in HIV PersistenceR56AI091573 · NIAID · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K · 2011 to 2011
$643k
Variation in Neurocognitive Impairment of HIV Ugandan Children by HIV SubtypeR21MH083573 · NIMH · NORTHERN CALIFORNIA INSTITUTE/RES/EDU · PI WONG, JOSEPH K · 2008 to 2009
$407k
Quantification of HIV Reservoirs in the Gut-Associated Lymphatic SystemIK2CX000520 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI YUKL, STEVEN A · 2011 to 2015
–
CSRD VA IK2 CX000520NIAID NIH HHS AI081668NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI081668NIAID NIH HHS R37 AI081668NIAID NIH HHS R56 AI091573NIDA NIH HHS 1K01DA024654NIDA NIH HHS K01 DA024654NIMH NIH HHS R21 MH083573NIMH NIH HHS R21MH083573NINDS NIH HHS R01 NS051132NINDS NIH HHS R01NS051132
6 · The paper itself

Abstract

The antiviral potency of the cytokine IFN-α has been long appreciated but remains poorly understood. A number of studies have suggested that induction of the apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3 (APOBEC3) and bone marrow stromal cell antigen 2 (BST-2/tetherin/CD317) retroviral restriction factors underlies the IFN-α-mediated suppression of HIV-1 replication in vitro. We sought to characterize the as-yet-undefined relationship between IFN-α treatment, retroviral restriction factors, and HIV-1 in vivo. APOBEC3G, APOBEC3F, and BST-2 expression levels were measured in HIV/hepatitis C virus (HCV)-coinfected, antiretroviral therapy-naïve individuals before, during, and after pegylated IFN-α/ribavirin (IFN-α/riba) combination therapy. IFN-α/riba therapy decreased HIV-1 viral load by -0.921 (±0.858) log(10) copies/mL in HIV/HCV-coinfected patients. APOBEC3G/3F and BST-2 mRNA expression was significantly elevated during IFN-α/riba treatment in patient-derived CD4+ T cells (P < 0.04 and P < 0.008, paired Wilcoxon), and extent of BST-2 induction was correlated with reduction in HIV-1 viral load during treatment (P < 0.05, Pearson's r). APOBEC3 induction during treatment was correlated with degree of viral hypermutation (P < 0.03, Spearman's ρ), and evolution of the HIV-1 accessory protein viral protein U (Vpu) during IFN-α/riba treatment was suggestive of increased BST-2-mediated selection pressure. These data suggest that host restriction factors play a critical role in the antiretroviral capacity of IFN-α in vivo, and warrant investigation into therapeutic strategies that specifically enhance the expression of these intrinsic immune factors in HIV-1-infected individuals.

Indexed as

Amino Acid SequenceAntigens, CDAPOBEC-3G DeaminaseBone Marrow Stromal Antigen 2CD4-Positive T-LymphocytesCytidine DeaminaseCytosine DeaminaseEvolution, MolecularGPI-Linked ProteinsHIV-1Human Immunodeficiency Virus ProteinsHumansInterferon-alphaMolecular Sequence DataMutationRibavirinAntigens, CDAPOBEC3F protein, humanAPOBEC-3G DeaminaseAPOBEC3G protein, humanBone Marrow Stromal Antigen 2BST2 protein, humanCytidine DeaminaseCytosine DeaminaseGPI-Linked ProteinsHuman Immunodeficiency Virus ProteinsInterferon-alphaRibavirinViral Regulatory and Accessory ProteinsViroporin Proteinsvpu protein, Human immunodeficiency virus 1

Identifiers

PMID22315404
PMCPMC3286922
OpenAlexW2121632263

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.